Green Extraction Method: Microwave-Assisted Water Extraction Followed by HILIC-HRMS Analysis to Quantify Hydrophilic Compounds in Plants

<b>Background:</b> Hydrophilic compounds, such as amino acids, organic acids and sugars, among others, are present in large amounts in plant cells. The analysis and quantification of these major hydrophilic compounds are particularly relevant in plant science because they have a considerable impact on the quality of plant-derived products and on plant-pathogen relationships. Our objective was to develop and validate a complete analysis workflow combining a water-based extraction procedure with a fast separation using hydrophilic interaction liquid chromatography coupled to high-resolution mass spectrometry (HILIC-HRMS) for quantitative analysis of hydrophilic compounds in plant tissues. <b>Results:</b> Water-based microwave-assisted extraction (MAE) methods for hydrophilic compounds were compared using HILIC-HRMS. The newly developed method involved 20 s MAE time followed by a 10 min HILIC-HRMS analysis. This bioanalytical method was validated for 24 polar metabolites, including amino acids, organic acids, and sugars, to ensure the reliability of analytical results: selectivity, limits of detection and quantification, calibration range and precision. Depending on the compounds, quantification limit was as low as 0.10 µM up to 4.50 µM. Between-run RSDs evaluated on <i>Vitis vinifera</i> and <i>Arabidopsis</i> samples were all below 20% except for three compounds. <b>Conclusions:</b> A water-based MAE method, coupled with HILIC-HRMS, was developed for the absolute quantification of free amino acids, organic acids, and sugars in plant tissues. Its effectiveness was demonstrated in both lignified plants, such as <i>Vitis vinifera</i>, and non-lignified plants, such as <i>Arabidopsis</i>. This method is suitable for medium- to high-throughput analysis of key polar metabolites from small amounts of plant material.