Large language models open new way of AI-assisted molecule design for chemists

Recent advancements in artificial intelligence (AI)-based molecular design methodologies have offered synthetic chemists new ways to design functional molecules with their desired properties. While various AI-based molecule generators have significantly advanced toward practical applications, their effective use still requires specialized knowledge and skills concerning AI techniques. Here, we develop a large language model (LLM)-powered chatbot, ChatChemTS, that assists users in designing new molecules using an AI-based molecule generator through only chat interactions, including automated construction of reward functions for the specified properties. Our study showcases the utility of ChatChemTS through de novo design cases involving chromophores and anticancer drugs (epidermal growth factor receptor inhibitors), exemplifying single- and multiobjective molecule optimization scenarios, respectively. ChatChemTS is provided as an open-source package on GitHub at https://github.com/molecule-generator-collection/ChatChemTS . Scientific contribution ChatChemTS is an open-source application that assists users in utilizing an AI-based molecule generator, ChemTSv2, solely through chat interactions. This study demonstrates that LLMs possess the potential to utilize advanced software, such as AI-based molecular generators, which require specialized knowledge and technical skills.

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Publication Details

Journal
Journal of Cheminformatics
Published
2025-03-24
DOI
https://doi.org/10.1186/s13321-025-00984-8
Citations
14
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
7.25

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article

Large language models open new way of AI-assisted molecule design for chemists

Shoichi Ishida, Tomohiro Sato, Teruki Honma, Kei Terayama
14 citations
Journal of Cheminformatics
Machine Learning in Materials Science
7.25
article

Large language models open new way of AI-assisted molecule design for chemists

Shoichi Ishida, Tomohiro Sato, Teruki Honma, Kei Terayama
article en
14 citations

Abstract

Recent advancements in artificial intelligence (AI)-based molecular design methodologies have offered synthetic chemists new ways to design functional molecules with their desired properties. While various AI-based molecule generators have significantly advanced toward practical applications, their effective use still requires specialized knowledge and skills concerning AI techniques. Here, we develop a large language model (LLM)-powered chatbot, ChatChemTS, that assists users in designing new molecules using an AI-based molecule generator through only chat interactions, including automated construction of reward functions for the specified properties. Our study showcases the utility of ChatChemTS through de novo design cases involving chromophores and anticancer drugs (epidermal growth factor receptor inhibitors), exemplifying single- and multiobjective molecule optimization scenarios, respectively. ChatChemTS is provided as an open-source package on GitHub at https://github.com/molecule-generator-collection/ChatChemTS . Scientific contribution ChatChemTS is an open-source application that assists users in utilizing an AI-based molecule generator, ChemTSv2, solely through chat interactions. This study demonstrates that LLMs possess the potential to utilize advanced software, such as AI-based molecular generators, which require specialized knowledge and technical skills.

Journal of CheminformaticsVol. 17(1)
Tokyo Institute of Technology (JP), Tokyo University of Science (JP), Yokohama University of Pharmacy (JP), Yokohama City University Medical Center (JP), RIKEN Center for Advanced Intelligence Project (JP), RIKEN Center for Integrative Medical Sciences (JP), JGC (Japan) (JP), Yokohama City University (JP)
Japan Agency for Medical Research and Development, Ministry of Education, Culture, Sports, Science and Technology
Quality Education
Openalex Percentile: Top 2%
Machine Learning in Materials Science
7.25
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