A high-quality chromosome-level genome assembly of Antiaris toxicaria

Here, we assembled two haplotypes of A. toxicaria, including a 671.73-Mb HapA subgenome containing 27,213 genes and a 666.41-Mb HapB subgenome containing 28,840 genes. Their contig N50 sizes were 90.18 and 90.29 Mb, respectively. The transposable elements represented 61.15% and 64.13% of the total assembled genome in HapA and HapB subgenome, respectively. A total of 27,213 and 28,840 genes were predicted in the two haplotypes. Hopefully, this chromosome-level genome of A. toxicaria will provide a valuable resource to enhance understanding of the biosynthesis of medicinal compounds.

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Publication Details

Journal
BMC Genomic Data
Published
2025-03-24
DOI
https://doi.org/10.1186/s12863-025-01309-2
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

A high-quality chromosome-level genome assembly of Antiaris toxicaria

Wanzhen Liu, Wei‐Cheng Huang, Fang Ni, Seping Dai et al.
BMC Genomic Data
Genomics and Phylogenetic Studies
article

A high-quality chromosome-level genome assembly of Antiaris toxicaria

Wanzhen Liu, Wei‐Cheng Huang, Fang Ni, Seping Dai, Yuan Xiong, Ya‐Mei Ding, Jiaxin Xiang, Hui Yu
article en

Abstract

Here, we assembled two haplotypes of A. toxicaria, including a 671.73-Mb HapA subgenome containing 27,213 genes and a 666.41-Mb HapB subgenome containing 28,840 genes. Their contig N50 sizes were 90.18 and 90.29 Mb, respectively. The transposable elements represented 61.15% and 64.13% of the total assembled genome in HapA and HapB subgenome, respectively. A total of 27,213 and 28,840 genes were predicted in the two haplotypes. Hopefully, this chromosome-level genome of A. toxicaria will provide a valuable resource to enhance understanding of the biosynthesis of medicinal compounds.

BMC Genomic DataVol. 26(1)
Hong Kong Baptist University (HK), Chinese Academy of Sciences (CN), South China Botanical Garden (CN)
Life in Land
Openalex Percentile: Top 95%
Genomics and Phylogenetic Studies
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