Isolation and <i>in silico</i> analysis of a new subclass of parasporin 4 from <i>Bacillus thuringiensis coreanensis</i>

Previous screening of Bt standard strains revealed the presence of a partial <i>ps4</i> gene in <i>Bacillus thuringiensis coreanensis</i> strain. The alignment obtained by the BLAST tool revealed 100% identity between the fragment detected in this work with a hypothetical protein (ANN35810.1) from the genome of that same strain. Considering this, the isolation of the complete gene present in this strain was performed by applying the polymer chain reaction (PCR) technique, using the hypothetical sequence as a basis for the primers elaboration. The <i>in silico</i> analysis of the obtained sequence revealed 92.03% similarity with the <i>ps4</i> sequence presented in the database (AB180980). Protein modeling studies and comparison of their structures revealed that the <i>B. thuringiensis coreanensis</i> has a new subclass of PS4, denominated PS4Ab1, being an important source of parasporin to be explored in biotechnological applications.

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Publication Details

Journal
PeerJ
Published
2025-03-24
DOI
https://doi.org/10.7717/peerj.19061
Primary Topic
Insect Resistance and Genetics
Type
article
Field-Weighted Citation Impact
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article

Isolation and in silico analysis of a new subclass of parasporin 4 from Bacillus thuringiensis coreanensis

Jackson Antônio Marcondes de Souza, Raquel Oliveira Moreira, Janete Apparecida Desidério, Luis Angel Chicoma Rojas et al.
PeerJ
Insect Resistance and Genetics
article

Isolation and in silico analysis of a new subclass of parasporin 4 from Bacillus thuringiensis coreanensis

Jackson Antônio Marcondes de Souza, Raquel Oliveira Moreira, Janete Apparecida Desidério, Luis Angel Chicoma Rojas, Thais Nayara Ferreira dos Santos, J. Rodrigues
article en

Abstract

Previous screening of Bt standard strains revealed the presence of a partial <i>ps4</i> gene in <i>Bacillus thuringiensis coreanensis</i> strain. The alignment obtained by the BLAST tool revealed 100% identity between the fragment detected in this work with a hypothetical protein (ANN35810.1) from the genome of that same strain. Considering this, the isolation of the complete gene present in this strain was performed by applying the polymer chain reaction (PCR) technique, using the hypothetical sequence as a basis for the primers elaboration. The <i>in silico</i> analysis of the obtained sequence revealed 92.03% similarity with the <i>ps4</i> sequence presented in the database (AB180980). Protein modeling studies and comparison of their structures revealed that the <i>B. thuringiensis coreanensis</i> has a new subclass of PS4, denominated PS4Ab1, being an important source of parasporin to be explored in biotechnological applications.

PeerJVol. 13
Universidade Estadual Paulista (Unesp) (BR)
Fundação de Amparo à Pesquisa do Estado de São Paulo, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
Life in Land
Openalex Percentile: Top 95%
Insect Resistance and Genetics
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