Characteristics and filtering of low-frequency artificial short deletion variations based on nanopore sequencing
Low-frequency artificial short deletion variations, especially the most challenging homopolymeric deletions, could be effectively filtered by Delter using normalized current signals or Q scores according to the employed sequencing strategies.
Authors
- Zilin Ren (ORCID: https://orcid.org/0000-0002-3621-1024)
- Xiaomin Zhang (ORCID: https://orcid.org/0009-0009-2001-4032)
- Tingting Yang (ORCID: https://orcid.org/0000-0001-7421-4704)
- Fuqiang Ye (ORCID: https://orcid.org/0000-0002-6069-5524)
- Ming Ni (ORCID: https://orcid.org/0000-0001-9465-2787)
- Jiarong Zhang (ORCID: https://orcid.org/0000-0002-6627-9169)
- Yifang Han
- Zihan Xie
- Xiaohong Yang (ORCID: https://orcid.org/0000-0001-7150-4570)
- Juanjuan Zhu (ORCID: https://orcid.org/0000-0002-8753-6953)
Institutions
- China Pharmaceutical University (CN)
- Shanxi Medical University (CN)
- Northeast Normal University (CN)
- Academy of Military Medical Sciences (CN)
- Huadong Hospital (CN)
- Chinese Academy of Agricultural Sciences (CN)
- Beijing University of Chemical Technology (CN)
Publication Details
- Journal
- GigaScience
- Published
- 2025-01-01
- DOI
- https://doi.org/10.1093/gigascience/giaf018
- Citations
- 2
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 1.61