Development necessitates evolutionarily conserved factors

Early-stage generalised transcription factors in biological development are often evolutionarily conserved across species. Here, we find for the first time that similar factors functionally emerge in an alternative medium of development. Through comprehensively analysing a Neural Cellular Automata (NCA) model of morphogenesis, we find multiple properties of the hidden units that are functionally analogous to early factors in biological development. We test the generalisation abilities of our model through transfer learning of other morphologies and find that developmental strategies learnt by the model are reused to grow new body forms by conserving its early generalised factors. Our paper therefore provides evidence that nature did not become locked into one arbitrary method of developing multicellular organisms: the use of early generalised factors as fundamental control mechanisms and the resulting necessity for evolutionary conservation of those factors may be fundamental to development, regardless of the details of how development is implemented.

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Publication Details

Journal
Scientific Reports
Published
2025-03-22
DOI
https://doi.org/10.1038/s41598-025-92541-4
Primary Topic
Developmental Biology and Gene Regulation
Type
article
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article

Development necessitates evolutionarily conserved factors

Peter J. Bentley, Paco C. K. Chow
Scientific Reports
Developmental Biology and Gene Regulation
article

Development necessitates evolutionarily conserved factors

Peter J. Bentley, Paco C. K. Chow
article en

Abstract

Early-stage generalised transcription factors in biological development are often evolutionarily conserved across species. Here, we find for the first time that similar factors functionally emerge in an alternative medium of development. Through comprehensively analysing a Neural Cellular Automata (NCA) model of morphogenesis, we find multiple properties of the hidden units that are functionally analogous to early factors in biological development. We test the generalisation abilities of our model through transfer learning of other morphologies and find that developmental strategies learnt by the model are reused to grow new body forms by conserving its early generalised factors. Our paper therefore provides evidence that nature did not become locked into one arbitrary method of developing multicellular organisms: the use of early generalised factors as fundamental control mechanisms and the resulting necessity for evolutionary conservation of those factors may be fundamental to development, regardless of the details of how development is implemented.

Scientific ReportsVol. 15(1)
University College London (GB)
Life in Land
Openalex Percentile: Top 95%
Developmental Biology and Gene Regulation
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Development necessitates evolutionarily conserved factors — Peter J. Bentley, Paco C. K. Chow · Scientific Reports (2025) | TGRS Research Map | TGRS