Hierarchical Deep Potential with Structure Constraints for Efficient Coarse-Grained Modeling

Coarse-grained molecular dynamics is a powerful approach for simulating large-scale systems by reducing the number of degrees of freedom. Nonetheless, the development of accurate coarse-grained force fields remains challenging, particularly for complex systems, such as polymers. In this study, we introduce a novel framework, hierarchical deep potential with structure constraints (HDP-SC), designed to construct coarse-grained force fields for polymer materials. Our methodology integrates a prior energy term obtained through direct Boltzmann inversion with a deep neural network potential, which is trained using hierarchical bead environment descriptors. This framework facilitates the reproduction of structural distributions and the potential of mean force, thus enhancing the accuracy and efficiency of the coarse-grained model. We validate our approach using polystyrene systems, demonstrating that the HDP-SC model not only successfully reproduces the structural properties of these systems but also remains applicable at larger scales. Our findings underscore the promise of machine learning-based techniques in advancing the development of coarse-grained force fields for polymer materials.

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Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2025-03-22
DOI
https://doi.org/10.1021/acs.jcim.4c02042
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00

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article

Hierarchical Deep Potential with Structure Constraints for Efficient Coarse-Grained Modeling

Yedi Li, Wenjie Yu, Lei Zhu, Qi Huang
Journal of Chemical Information and Modeling
Machine Learning in Materials Science
article

Hierarchical Deep Potential with Structure Constraints for Efficient Coarse-Grained Modeling

Yedi Li, Wenjie Yu, Lei Zhu, Qi Huang
article en

Abstract

Coarse-grained molecular dynamics is a powerful approach for simulating large-scale systems by reducing the number of degrees of freedom. Nonetheless, the development of accurate coarse-grained force fields remains challenging, particularly for complex systems, such as polymers. In this study, we introduce a novel framework, hierarchical deep potential with structure constraints (HDP-SC), designed to construct coarse-grained force fields for polymer materials. Our methodology integrates a prior energy term obtained through direct Boltzmann inversion with a deep neural network potential, which is trained using hierarchical bead environment descriptors. This framework facilitates the reproduction of structural distributions and the potential of mean force, thus enhancing the accuracy and efficiency of the coarse-grained model. We validate our approach using polystyrene systems, demonstrating that the HDP-SC model not only successfully reproduces the structural properties of these systems but also remains applicable at larger scales. Our findings underscore the promise of machine learning-based techniques in advancing the development of coarse-grained force fields for polymer materials.

Journal of Chemical Information and ModelingVol. 65(7)
Chinese Academy of Sciences (CN), Shanghai Institute of Microsystem and Information Technology (CN), University of Chinese Academy of Sciences (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 96%
Machine Learning in Materials Science
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Hierarchical Deep Potential with Structure Constraints for Efficient Coarse-Grained Modeling — Yedi Li, Wenjie Yu, et al. · Journal of Chemical Information and Modeling (2025) | TGRS Research Map | TGRS