Modeling Carbon Basicity

This work presents a predictive model of aqueous ionization constants (pK<sub>a</sub>) of protonatable carbons in certain aromatic rings. The phenomenon of carbon atoms sometimes acting as a stable and reversible base accepting a proton in water solution is surprisingly little recognized in medicinal chemistry, although known to general chemists for the past 60+years. We present the development and results for two predictive models: 1) identifying the most basic carbon in a ring, and 2) calculating the resulting microscopic pK<sub>a</sub> value. Both models were incorporated into our global (i. e., taking all ionizable groups into account) S+pKa model.[1-2].

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Publication Details

Journal
Molecular Informatics
Published
2025-03-01
DOI
https://doi.org/10.1002/minf.202400296
Primary Topic
Chemical Reaction Mechanisms
Type
article
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article

Modeling Carbon Basicity

Robert Fraczkiewicz, Marvin Waldman
Molecular Informatics
Chemical Reaction Mechanisms
article

Modeling Carbon Basicity

Robert Fraczkiewicz, Marvin Waldman
article en

Abstract

This work presents a predictive model of aqueous ionization constants (pK<sub>a</sub>) of protonatable carbons in certain aromatic rings. The phenomenon of carbon atoms sometimes acting as a stable and reversible base accepting a proton in water solution is surprisingly little recognized in medicinal chemistry, although known to general chemists for the past 60+years. We present the development and results for two predictive models: 1) identifying the most basic carbon in a ring, and 2) calculating the resulting microscopic pK<sub>a</sub> value. Both models were incorporated into our global (i. e., taking all ionizable groups into account) S+pKa model.[1-2].

Molecular InformaticsVol. 44(3)
Simulations Plus (United States) (US)
Clean water and sanitation
Openalex Percentile: Top 96%
Chemical Reaction Mechanisms
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