The role of Ca-bridged organic matter in an alkaline soil, as revealed by multimodal chemical imaging

• Calcium mineral – organic matter (OM) interactions were probed at the nanoscale with scanning transmission x-ray microscopy combined with near-edge x-ray absorption fine structure. • Details of mineralogy, speciation, and the nature of calcium-OM bridging are reported. • OM near calcite crystal surfaces is enriched in lipid and protein moieties, while OM next to Fe minerals displays a strong contribution from aromatic compounds. • On the surface of microbes, calcium-OM is admixed with carbonate of microbial in origin, found largely amorphous. Mineral–organic matter (OM) studies have predominantly focused on acidic soils that are abundant in iron (Fe) oxides and aluminum (Al) oxides. We have probed mineral–OM interactions in an alkaline or calcareous soil of the Aridisols class. Unlike the role of Fe and Al, the role of Ca-minerals (particularly calcite), which are ubiquitous in alkaline soils, in OM sequestration is not well understood. Multiple recent model studies with aqueous Ca 2+ or synthetic calcite and a suite of OM compounds have shown Ca-OM assemblages to be spatially correlated with calcite at the microscale. To study the chemical state of both Ca and Fe and their competing role in soil organic matter (SOM) stabilization, we performed laboratory characterization using x-ray diffraction, Mössbauer spectroscopy, x-ray photoelectron spectroscopy, scanning electron microscopy, and scanning transmission electron microscopy, alongside synchrotron-based microscale chemical imaging using scanning transmission x-ray microscopy combined with near-edge x-ray absorption fine structure. Ca mineral–organic associations were found to be ubiquitous in this system and are likely critical for understanding SOM stabilization/degradation in alkaline soils. From our findings on mineralogy, speciation, and the nature of Ca-OM bridging, we identified differences in C and Ca chemistry based on the relative location of OM to Ca minerals. The OM near the calcite crystal was enriched in lipid and protein moieties, Ca-OM next to Fe minerals displayed a strong contribution from aromatic compounds, while on the surface of microbes, the carbonate was believed to be of microbial in origin, as also suggested by preliminary works reporting on the formation of amorphous calcite or nano-calcite. In Ca-OM admixed with carbonate, it was difficult to distinguish Ca-associated OM from amorphous calcite or nano-calcite.

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Publication Details

Journal
Geoderma
Published
2025-03-20
DOI
https://doi.org/10.1016/j.geoderma.2025.117256
Primary Topic
Hydrocarbon exploration and reservoir analysis
Type
article
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article

The role of Ca-bridged organic matter in an alkaline soil, as revealed by multimodal chemical imaging

Kirsten Hofmockel, Rosalie Chu, Lye Meng Markillie, Swarup China et al.
Geoderma
Hydrocarbon exploration and reservoir analysis
article

The role of Ca-bridged organic matter in an alkaline soil, as revealed by multimodal chemical imaging

Kirsten Hofmockel, Rosalie Chu, Lye Meng Markillie, Swarup China, Anil Krishna Battu, Nurun Nahar Lata, Libor Kovařík, Hugh Mitchell, Matthew A. Marcus, Tamás Varga, Qian Zhao, Daniel E. Perea, Ravi Kukkadapu, James Moran, Rene Maurice Boiteau, Alice Dohnálková, Mark Engelhard, Thomas Wietsma
article en

Abstract

• Calcium mineral – organic matter (OM) interactions were probed at the nanoscale with scanning transmission x-ray microscopy combined with near-edge x-ray absorption fine structure. • Details of mineralogy, speciation, and the nature of calcium-OM bridging are reported. • OM near calcite crystal surfaces is enriched in lipid and protein moieties, while OM next to Fe minerals displays a strong contribution from aromatic compounds. • On the surface of microbes, calcium-OM is admixed with carbonate of microbial in origin, found largely amorphous. Mineral–organic matter (OM) studies have predominantly focused on acidic soils that are abundant in iron (Fe) oxides and aluminum (Al) oxides. We have probed mineral–OM interactions in an alkaline or calcareous soil of the Aridisols class. Unlike the role of Fe and Al, the role of Ca-minerals (particularly calcite), which are ubiquitous in alkaline soils, in OM sequestration is not well understood. Multiple recent model studies with aqueous Ca 2+ or synthetic calcite and a suite of OM compounds have shown Ca-OM assemblages to be spatially correlated with calcite at the microscale. To study the chemical state of both Ca and Fe and their competing role in soil organic matter (SOM) stabilization, we performed laboratory characterization using x-ray diffraction, Mössbauer spectroscopy, x-ray photoelectron spectroscopy, scanning electron microscopy, and scanning transmission electron microscopy, alongside synchrotron-based microscale chemical imaging using scanning transmission x-ray microscopy combined with near-edge x-ray absorption fine structure. Ca mineral–organic associations were found to be ubiquitous in this system and are likely critical for understanding SOM stabilization/degradation in alkaline soils. From our findings on mineralogy, speciation, and the nature of Ca-OM bridging, we identified differences in C and Ca chemistry based on the relative location of OM to Ca minerals. The OM near the calcite crystal was enriched in lipid and protein moieties, Ca-OM next to Fe minerals displayed a strong contribution from aromatic compounds, while on the surface of microbes, the carbonate was believed to be of microbial in origin, as also suggested by preliminary works reporting on the formation of amorphous calcite or nano-calcite. In Ca-OM admixed with carbonate, it was difficult to distinguish Ca-associated OM from amorphous calcite or nano-calcite.

GeodermaVol. 456
University of Minnesota (US), Pacific Northwest National Laboratory (US), Lawrence Berkeley National Laboratory (US), University of Minnesota System (US), Environmental Molecular Sciences Laboratory (US), Michigan State University (US)
Openalex Percentile: Top 94%
Hydrocarbon exploration and reservoir analysis
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