<scp>VANTAGE</scp> : An open‐source application for visualisation, navigation and analysis of video and ancillary time‐series data in bio‐logging studies

Abstract Animal‐attached devices, or bio‐loggers, that record data on multiple channels are frequently used to study the movement of free‐ranging animals. In recent years, the deployment of animal‐borne video cameras in addition to other time‐series loggers, such as accelerometers and depth sensors, has become popular. Visual observations from animal‐borne cameras provide ideal ground‐truth data when behavioural inferences are made from concurrently deployed bio‐loggers. However, such deployments generate large amounts of data that are often not synchronised and may be difficult to analyse because open‐source software tools facilitating simultaneous visualisation of multiple data channels along with video streams are lacking. Here we present VANTAGE (Video Analysis and Navigation Tool for Advanced Graphical Exploration, available at https://github.com/sschoombie/VANTAGE ), a new open‐source graphical user interface written in Python. VANTAGE aims to simplify time‐consuming data processing and analyses through (1) concurrent visualisation of video footage and accompanying bio‐logger time‐series data, (2) temporal synchronisation of the different data streams, (3) efficient annotation across data types, and (4) video enhancement and machine learning functionalities. We illustrate both manual and automated synchronisation of animal‐borne video and accelerometer‐depth data (obtained from foraging penguins) using VANTAGE. Once synchronised, VANTAGE allows for quick and easy navigation through the data to areas of interest, with behavioural observations labelled on one data type reflecting in all the data series. The labelled time‐series data can then be exported for further analyses (e.g., in machine learning applications). VANTAGE allows the integration of video and other time‐series data recorded at the same time, allowing more efficient analysis and labelling of the data. Bio‐logging studies often use data from multiple loggers, and analysing these data can be challenging when not properly synchronised. VANTAGE aims to simplify this synchronisation process through visualisation of multiple data streams.

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2025-03-19
DOI
https://doi.org/10.1111/2041-210x.70026
Citations
1
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
1.84

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article

VANTAGE : An open‐source application for visualisation, navigation and analysis of video and ancillary time‐series data in bio‐logging studies

W. Chris Oosthuizen, Stefan Britz, Andrew Lowther, Stefan Schoombie et al.
1 citations
Methods in Ecology and Evolution
Species Distribution and Climate Change
1.84
article

VANTAGE : An open‐source application for visualisation, navigation and analysis of video and ancillary time‐series data in bio‐logging studies

W. Chris Oosthuizen, Stefan Britz, Andrew Lowther, Stefan Schoombie, Thea de Wet
article en
1 citations

Abstract

Abstract Animal‐attached devices, or bio‐loggers, that record data on multiple channels are frequently used to study the movement of free‐ranging animals. In recent years, the deployment of animal‐borne video cameras in addition to other time‐series loggers, such as accelerometers and depth sensors, has become popular. Visual observations from animal‐borne cameras provide ideal ground‐truth data when behavioural inferences are made from concurrently deployed bio‐loggers. However, such deployments generate large amounts of data that are often not synchronised and may be difficult to analyse because open‐source software tools facilitating simultaneous visualisation of multiple data channels along with video streams are lacking. Here we present VANTAGE (Video Analysis and Navigation Tool for Advanced Graphical Exploration, available at https://github.com/sschoombie/VANTAGE ), a new open‐source graphical user interface written in Python. VANTAGE aims to simplify time‐consuming data processing and analyses through (1) concurrent visualisation of video footage and accompanying bio‐logger time‐series data, (2) temporal synchronisation of the different data streams, (3) efficient annotation across data types, and (4) video enhancement and machine learning functionalities. We illustrate both manual and automated synchronisation of animal‐borne video and accelerometer‐depth data (obtained from foraging penguins) using VANTAGE. Once synchronised, VANTAGE allows for quick and easy navigation through the data to areas of interest, with behavioural observations labelled on one data type reflecting in all the data series. The labelled time‐series data can then be exported for further analyses (e.g., in machine learning applications). VANTAGE allows the integration of video and other time‐series data recorded at the same time, allowing more efficient analysis and labelling of the data. Bio‐logging studies often use data from multiple loggers, and analysing these data can be challenging when not properly synchronised. VANTAGE aims to simplify this synchronisation process through visualisation of multiple data streams.

Methods in Ecology and EvolutionVol. 16(5)
University of Cape Town (ZA), National Institute for Theoretical Physics (ZA), Norwegian Polar Institute (NO)
Norges Forskningsråd, Antarctic Wildlife Research Fund
Openalex Percentile: Top 16%
Species Distribution and Climate Change
1.84
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