B-Raman: an open-source, versatile platform for automated Raman microspectroscopy sample analysis

The B-Raman is a versatile, open-source platform designed for the automated analysis and characterization of biological samples both in vitro and in vivo that combines brightfield microscopy and Raman microspectroscopy. Its open-source, Python-based, integrated control and analysis software allows for the development of advanced tailored measurement protocols. Moreover, the analysis software integrates a large number of label-free analysis techniques. Particularly, spectral deconvolution techniques can be used for label-free tissue segmentation. We demonstrate the use of the platform and its analysis software for the analysis and automated segmentation of different tissue sections, including osteochondral tissue.

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Published
2025-03-19
DOI
https://doi.org/10.1117/12.3043930
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
Type
article
Field-Weighted Citation Impact
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article

B-Raman: an open-source, versatile platform for automated Raman microspectroscopy sample analysis

Simon Vilms Pedersen, Molly M. Stevens, Alvaro Fernandez Galiana
Spectroscopy Techniques in Biomedical and Chemical Research
article

B-Raman: an open-source, versatile platform for automated Raman microspectroscopy sample analysis

Simon Vilms Pedersen, Molly M. Stevens, Alvaro Fernandez Galiana
article en

Abstract

The B-Raman is a versatile, open-source platform designed for the automated analysis and characterization of biological samples both in vitro and in vivo that combines brightfield microscopy and Raman microspectroscopy. Its open-source, Python-based, integrated control and analysis software allows for the development of advanced tailored measurement protocols. Moreover, the analysis software integrates a large number of label-free analysis techniques. Particularly, spectral deconvolution techniques can be used for label-free tissue segmentation. We demonstrate the use of the platform and its analysis software for the analysis and automated segmentation of different tissue sections, including osteochondral tissue.

University of Southern Denmark (DK), University of Oxford (GB), Imperial College London (GB)
Openalex Percentile: Top 95%
Spectroscopy Techniques in Biomedical and Chemical Research
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B-Raman: an open-source, versatile platform for automated Raman microspectroscopy sample analysis — Simon Vilms Pedersen, Molly M. Stevens, et al. · (2025) | TGRS Research Map | TGRS