PIRO: A web-based search platform for pathology reports, leveraging large language models to generate discrete searchable insights

Pathologists rely on access to historical diagnostic case texts for research, education, and peer learning. However, many laboratory information systems (LIS), including Epic Beaker, lack optimized search tools tailored to pathology-specific text queries. To address this need, we developed PIRO (Pathology Information Retrieval Optimizer), a web-based platform enabling efficient text searches of diagnostic archives. Built using FastAPI, Angular, and Apache Solr, PIRO supports both basic and advanced search functionalities, faceted filtering, and data extraction, while ensuring compliance with institutional privacy protocols. PIRO's capabilities extend to case cohort building, search result export, and secure access control within the institutional network. In an 8-month study, we observed significantly higher PIRO adoption rates (67 %) among pathologists compared to Epic Beaker's SlicerDicer (9 %), underscoring PIRO's usability and relevance. Additionally, we implemented a large language model (LLM) to annotate reports with a "Malignancy Risk" label, enhancing search precision and enabling future expansion of automated annotations. Ongoing work focuses on integrating PIRO with our digital pathology platform, enabling direct access to digital slides from case results. PIRO's adaptable design makes it applicable across institutions, advancing search and retrieval efficiency in pathology archives and enhancing support for pathology research and education.

Authors

Institutions

Publication Details

Journal
Journal of Pathology Informatics
Published
2025-03-18
DOI
https://doi.org/10.1016/j.jpi.2025.100436
Citations
1
Primary Topic
Artificial Intelligence in Healthcare and Education
Type
article
Field-Weighted Citation Impact
0.65
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

PIRO: A web-based search platform for pathology reports, leveraging large language models to generate discrete searchable insights

Samer Albahra, Hooman H. Rashidi, Scott Robertson, Venkata Koppireddy et al.
1 citations
Journal of Pathology Informatics
Artificial Intelligence in Healthcare and Education
0.65
article

PIRO: A web-based search platform for pathology reports, leveraging large language models to generate discrete searchable insights

Samer Albahra, Hooman H. Rashidi, Scott Robertson, Venkata Koppireddy, Jeremy Cumbo
article en
1 citations

Abstract

Pathologists rely on access to historical diagnostic case texts for research, education, and peer learning. However, many laboratory information systems (LIS), including Epic Beaker, lack optimized search tools tailored to pathology-specific text queries. To address this need, we developed PIRO (Pathology Information Retrieval Optimizer), a web-based platform enabling efficient text searches of diagnostic archives. Built using FastAPI, Angular, and Apache Solr, PIRO supports both basic and advanced search functionalities, faceted filtering, and data extraction, while ensuring compliance with institutional privacy protocols. PIRO's capabilities extend to case cohort building, search result export, and secure access control within the institutional network. In an 8-month study, we observed significantly higher PIRO adoption rates (67 %) among pathologists compared to Epic Beaker's SlicerDicer (9 %), underscoring PIRO's usability and relevance. Additionally, we implemented a large language model (LLM) to annotate reports with a "Malignancy Risk" label, enhancing search precision and enabling future expansion of automated annotations. Ongoing work focuses on integrating PIRO with our digital pathology platform, enabling direct access to digital slides from case results. PIRO's adaptable design makes it applicable across institutions, advancing search and retrieval efficiency in pathology archives and enhancing support for pathology research and education.

Journal of Pathology InformaticsVol. 17
Cleveland Clinic (US), University of Pittsburgh (US)
Openalex Percentile: Top 27%
Artificial Intelligence in Healthcare and Education
0.65
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

PIRO: A web-based search platform for pathology reports, leveraging large language models to generate discrete searchable insights — Samer Albahra, Hooman H. Rashidi, et al. · Journal of Pathology Informatics (2025) | TGRS Research Map | TGRS