A chromosome-level genome assembly of eriophyoid mite Setoptus koraiensis

Eriophyoidea represents a highly diverse superfamily of herbivorous mites in the Acariformes, including over 5,000 named species that are distributed worldwide. However, the lack of chromosome-level genome prevents our understanding of the evolution in this group. Here, we report the first chromosome-level genome assembly of Setoptus koraiensis using Illumina, PacBio, and Hi-C sequencing technologies. The assembled genome has a size of 47 Mb with an N50 of 24.53 Mb, anchored into two chromosomes. The chromosome-level genome assembly had a BUSCO completeness of 89%. We identified 5,954 protein-coding genes, with 4,770 genes that could be functionally annotated. This genome provides resources to further understand the genetic and evolution of eriophyoid mites.

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Publication Details

Journal
Scientific Data
Published
2025-03-18
DOI
https://doi.org/10.1038/s41597-025-04814-2
Citations
1
Primary Topic
Study of Mite Species
Type
article
Field-Weighted Citation Impact
3.03

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article

A chromosome-level genome assembly of eriophyoid mite Setoptus koraiensis

Jing‐Tao Sun, Lei Chen, Xiao–Feng Xue, Zi‐Kai Shao
1 citations
Scientific Data
Study of Mite Species
3.03
article

A chromosome-level genome assembly of eriophyoid mite Setoptus koraiensis

Jing‐Tao Sun, Lei Chen, Xiao–Feng Xue, Zi‐Kai Shao
article en
1 citations

Abstract

Eriophyoidea represents a highly diverse superfamily of herbivorous mites in the Acariformes, including over 5,000 named species that are distributed worldwide. However, the lack of chromosome-level genome prevents our understanding of the evolution in this group. Here, we report the first chromosome-level genome assembly of Setoptus koraiensis using Illumina, PacBio, and Hi-C sequencing technologies. The assembled genome has a size of 47 Mb with an N50 of 24.53 Mb, anchored into two chromosomes. The chromosome-level genome assembly had a BUSCO completeness of 89%. We identified 5,954 protein-coding genes, with 4,770 genes that could be functionally annotated. This genome provides resources to further understand the genetic and evolution of eriophyoid mites.

Scientific DataVol. 12(1)
Nanjing Agricultural University (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 12%
Study of Mite Species
3.03
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