Structural characteristics of mitochondrial genome of Spirobo-lus walkeri (Spirobolida: Spirobolidae), and phylogenetic analysis of Diplopoda

The phylogeny of Diplopoda, a group of ancient arthropod and an important component of modern terrestrial ecosystems, remains unclear. Here, the complete mitogenome of <i>Spirobolus walkeri</i> was determined. The newly sequenced complete mitogenome was circular DNA molecules with sizes of 14,879 bp. The mitogenome was composed of 37 genes and one control region. Negative AT-skews and positive GC-skews were found in whole mitogenome. The gene <i>COX1</i> used CGA as the start codon, while the other PCGs utilized ATN (A, T, G) as the start codons; however, the sequence of the stop codon was variable. The Ser2 exhibited the highest usage bias. All tRNAs have typical cloverleaf structures, except <i>trnS-AGC</i> and <i>trnM</i>. Phylogenetic analysis showed that <i>S. walkeri</i> and <i>Spirobolus bungii</i> shared a close relationship and that they were also closely related with <i>Narceus annularus</i>. This study helps resolve taxonomic ambiguities among morphologically similar species and provides data to support the establishment of evolutionary benchmarks for millipedes, including gene rearrangements and variations in tRNA structure.

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Journal
Frontiers in Genetics
Published
2025-03-17
DOI
https://doi.org/10.3389/fgene.2025.1566634
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Structural characteristics of mitochondrial genome of Spirobo-lus walkeri (Spirobolida: Spirobolidae), and phylogenetic analysis of Diplopoda

Lingna Li, Shengjun Zhao, Wenwen Zhang, Hongyi Liu et al.
Frontiers in Genetics
Genomics and Phylogenetic Studies
article

Structural characteristics of mitochondrial genome of Spirobo-lus walkeri (Spirobolida: Spirobolidae), and phylogenetic analysis of Diplopoda

Lingna Li, Shengjun Zhao, Wenwen Zhang, Hongyi Liu, Peng Cui, Yingzhu Li
article en

Abstract

The phylogeny of Diplopoda, a group of ancient arthropod and an important component of modern terrestrial ecosystems, remains unclear. Here, the complete mitogenome of <i>Spirobolus walkeri</i> was determined. The newly sequenced complete mitogenome was circular DNA molecules with sizes of 14,879 bp. The mitogenome was composed of 37 genes and one control region. Negative AT-skews and positive GC-skews were found in whole mitogenome. The gene <i>COX1</i> used CGA as the start codon, while the other PCGs utilized ATN (A, T, G) as the start codons; however, the sequence of the stop codon was variable. The Ser2 exhibited the highest usage bias. All tRNAs have typical cloverleaf structures, except <i>trnS-AGC</i> and <i>trnM</i>. Phylogenetic analysis showed that <i>S. walkeri</i> and <i>Spirobolus bungii</i> shared a close relationship and that they were also closely related with <i>Narceus annularus</i>. This study helps resolve taxonomic ambiguities among morphologically similar species and provides data to support the establishment of evolutionary benchmarks for millipedes, including gene rearrangements and variations in tRNA structure.

Frontiers in GeneticsVol. 16
Nanjing Forestry University (CN), Center for Life Sciences (CN)
Openalex Percentile: Top 95%
Genomics and Phylogenetic Studies
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Structural characteristics of mitochondrial genome of Spirobo-lus walkeri (Spirobolida: Spirobolidae), and phylogenetic analysis of Diplopoda — Lingna Li, Shengjun Zhao, et al. · Frontiers in Genetics (2025) | TGRS Research Map | TGRS