P336: Testing concordance of pathogenicity predictions from orthogonal machine learning algorithms and signal to noise analysis

Since the adoption of the ACMG/AMP guidelines, many methods and algorithms, using diverse and distinct types of data, have been developed to predict the pathogenicity and assess the functional effects of variants. While concordance between different models has traditionally been desired to build confidence in predictions, the lack of agreement between individually validated models that rely on different types of data can tell us important information about specific genes and genetic variants. Here, we compare the predictions of several machine learning models developed by a clinical laboratory to a recently created computational tool (DiscoVari) that is based on signal to noise (S:N) analysis in nine cardiomyopathy- and channelopathy-related genes.

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Publication Details

Journal
Genetics in Medicine Open
Published
2025-01-01
DOI
https://doi.org/10.1016/j.gimo.2025.102301
Primary Topic
COVID-19 diagnosis using AI
Type
article
Field-Weighted Citation Impact
0.00
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article

P336: Testing concordance of pathogenicity predictions from orthogonal machine learning algorithms and signal to noise analysis

Andrew Paul Landstrom, Leonie M. Kurzlechner, Flavia M. Facio, Trevor Williams et al.
Genetics in Medicine Open
COVID-19 diagnosis using AI
article

P336: Testing concordance of pathogenicity predictions from orthogonal machine learning algorithms and signal to noise analysis

Andrew Paul Landstrom, Leonie M. Kurzlechner, Flavia M. Facio, Trevor Williams, Keith Nykamp, Yuya Kobayashi
article en

Abstract

Since the adoption of the ACMG/AMP guidelines, many methods and algorithms, using diverse and distinct types of data, have been developed to predict the pathogenicity and assess the functional effects of variants. While concordance between different models has traditionally been desired to build confidence in predictions, the lack of agreement between individually validated models that rely on different types of data can tell us important information about specific genes and genetic variants. Here, we compare the predictions of several machine learning models developed by a clinical laboratory to a recently created computational tool (DiscoVari) that is based on signal to noise (S:N) analysis in nine cardiomyopathy- and channelopathy-related genes.

Genetics in Medicine OpenVol. 3
Duke University (US), LabCorp (United States) (US), University of Pennsylvania (US)
Openalex Percentile: Top 93%
COVID-19 diagnosis using AI
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P336: Testing concordance of pathogenicity predictions from orthogonal machine learning algorithms and signal to noise analysis — Andrew Paul Landstrom, Leonie M. Kurzlechner, et al. · Genetics in Medicine Open (2025) | TGRS Research Map | TGRS