P280: Enhancing genomic data accessibility with Hypothes.is parsing tool for variant annotations

Efficiently analyzing genomic variant data is critical for advancing our understanding of various genetic diseases and identifying genotype-phenotype correlations. Hypothes.is, a collaborative web-based annotation tool, allows users to store annotations from publicly sourced data, including peer-reviewed literature of genetic and genomic data. The University of North Carolina Biocuration and Coordination Core (UNC BCC), a part of the Clinical Genome Resource (ClinGen), leverages hypothes.is for community curation to create repositories of structured annotations for gene and variant adjudication, referred to as “Baseline Annotation.” However, raw data obtained from hypothes.is is incompatible with Excel-based analyses, limiting its utility for large-scale studies.

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Publication Details

Journal
Genetics in Medicine Open
Published
2025-01-01
DOI
https://doi.org/10.1016/j.gimo.2025.102245
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
0.00
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article

P280: Enhancing genomic data accessibility with Hypothes.is parsing tool for variant annotations

Justyne Ross, Jonathan S. Berg, Courtney Thaxton, R. Arun
Genetics in Medicine Open
Biomedical Text Mining and Ontologies
article

P280: Enhancing genomic data accessibility with Hypothes.is parsing tool for variant annotations

Justyne Ross, Jonathan S. Berg, Courtney Thaxton, R. Arun
article en

Abstract

Efficiently analyzing genomic variant data is critical for advancing our understanding of various genetic diseases and identifying genotype-phenotype correlations. Hypothes.is, a collaborative web-based annotation tool, allows users to store annotations from publicly sourced data, including peer-reviewed literature of genetic and genomic data. The University of North Carolina Biocuration and Coordination Core (UNC BCC), a part of the Clinical Genome Resource (ClinGen), leverages hypothes.is for community curation to create repositories of structured annotations for gene and variant adjudication, referred to as “Baseline Annotation.” However, raw data obtained from hypothes.is is incompatible with Excel-based analyses, limiting its utility for large-scale studies.

Genetics in Medicine OpenVol. 3
University of North Carolina at Chapel Hill (US)
Openalex Percentile: Top 96%
Biomedical Text Mining and Ontologies
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P280: Enhancing genomic data accessibility with Hypothes.is parsing tool for variant annotations — Justyne Ross, Jonathan S. Berg, et al. · Genetics in Medicine Open (2025) | TGRS Research Map | TGRS