Development and validation of an immune signature-based risk model for prognostic assessment in melanoma

Melanoma is a highly invasive malignancy with poor prognoses in advanced stages. Developing a risk model that can accurately assess prognosis and guide personalized treatment is crucial for improving the clinical management of melanoma. This study aims to develop and validate an immune-based prognostic risk model for melanoma through comprehensive bioinformatics analysis. We collected transcriptomic data from multiple public databases and identified 9 immune features significantly associated with prognosis using single-sample Gene Set Enrichment Analysis (ssGSEA) and Cox regression. These features were utilized to construct the risk model, which was subsequently validated using relevant bulk transcriptomic datasets and single-cell transcriptomic datasets from the GEO database, encompassing diverse patient populations and sample types. The model effectively stratified patients into high-risk and low-risk groups with distinct survival outcomes. Further analysis revealed significant associations between the risk model and genomic heterogeneity indicators, such as tumor mutational burden (TMB), loss of heterozygosity (LOH), and immune checkpoint gene expression. The model robustness was confirmed using single-cell transcriptomic data, highlighting key genes with potential therapeutic relevance. Our findings provide a reliable prognostic tool and novel insights for personalized melanoma treatment, emphasizing the need for further clinical validation.

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Publication Details

Journal
Scientific Reports
Published
2025-03-17
DOI
https://doi.org/10.1038/s41598-025-90917-0
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

Development and validation of an immune signature-based risk model for prognostic assessment in melanoma

Xuejie Chen, Jingjing Ruan, Zeqi Shi, Rui Tao et al.
Scientific Reports
Single-cell and spatial transcriptomics
article

Development and validation of an immune signature-based risk model for prognostic assessment in melanoma

Xuejie Chen, Jingjing Ruan, Zeqi Shi, Rui Tao, Baoxing Pang, Sicheng Li, Shengzhi Zhou, Sis Aghayants, Zhanyong Zhu
article en

Abstract

Melanoma is a highly invasive malignancy with poor prognoses in advanced stages. Developing a risk model that can accurately assess prognosis and guide personalized treatment is crucial for improving the clinical management of melanoma. This study aims to develop and validate an immune-based prognostic risk model for melanoma through comprehensive bioinformatics analysis. We collected transcriptomic data from multiple public databases and identified 9 immune features significantly associated with prognosis using single-sample Gene Set Enrichment Analysis (ssGSEA) and Cox regression. These features were utilized to construct the risk model, which was subsequently validated using relevant bulk transcriptomic datasets and single-cell transcriptomic datasets from the GEO database, encompassing diverse patient populations and sample types. The model effectively stratified patients into high-risk and low-risk groups with distinct survival outcomes. Further analysis revealed significant associations between the risk model and genomic heterogeneity indicators, such as tumor mutational burden (TMB), loss of heterozygosity (LOH), and immune checkpoint gene expression. The model robustness was confirmed using single-cell transcriptomic data, highlighting key genes with potential therapeutic relevance. Our findings provide a reliable prognostic tool and novel insights for personalized melanoma treatment, emphasizing the need for further clinical validation.

Scientific ReportsVol. 15(1)
Donghua University (CN), Wuhan University (CN), Tongren Hospital (CN), Wuhan Third Hospital (CN), Renmin Hospital of Wuhan University (CN), Tongji Hospital (CN), Huazhong University of Science and Technology (CN)
Openalex Percentile: Top 96%
Single-cell and spatial transcriptomics
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