Description of Qipengyuania profunda sp. nov., isolated from deep seawater of the Amundsen Sea (Antarctica), and reclassification of Qipengyuania aerophila Liu et al. 2022 as a later heterotypic synonym of Qipengyuania pacifica Tareen et al. 2022
Gram-stain-negative, aerobic, rod-shaped bacterial strains, designated HL-TH1<sup>T</sup> and HL-TH5, were isolated from deep seawater (1127 m depth) of the Amundsen Sea, Antarctica. Phylogenetic analyses based on the 16S rRNA gene sequence revealed that strains HL-TH1<sup>T</sup> and HL-TH5 were members of the genus <i>Qipengyuania</i> with close relatives <i>Qipengyuania aerophila</i> GH25<sup>T</sup> (99.3%), <i>Qipengyuania pacifica</i> NZ-96<sup>T</sup> (99.3%), <i>Qipengyuania profundimaris</i> G39<sup>T</sup> (99.1%) and <i>Qipengyuania citrea</i> RE35F/1<sup>T</sup> (98.8%). The complete genome sequences of strains HL-TH1<sup>T</sup> and HL-TH5 comprised a chromosome of 3.2 Mbp and a plasmid of 0.1 Mbp, with DNA G+C content of 64.1%. The whole genome-based comparisons using the average nt identity and digital DNA-DNA hybridization values revealed that both strains belonged to the same genomic species but were clearly discriminated (79.4-85.8% and 21.9-29.3%, respectively) from their close relatives in the genus <i>Qipengyuania</i>. Both strains showed optimal growth at 30 °C, pH 6.5-7.0 and 1.5-2.5% sea salts. The major fatty acids of both strains were C<sub>18:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>18:1</sub> <i> ω</i>7<i>c</i> (37.8-38.4%), C<sub>17:1</sub> <i> ω</i>6<i>c</i> (18.1-19.7%) and C<sub>16:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>16:1</sub> <i> ω</i>7<i>c</i> (12.3-16.7%). The major isoprenoid quinone was ubiquinone-10. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and two unidentified lipids. Hence, we propose that strains HL-TH1<sup>T</sup> and HL-TH5 are assigned to a novel species belonging to the genus <i>Qipengyuania</i>, for which the name <i>Qipengyuania profunda</i> sp. nov. is proposed. The type strain is HL-TH1<sup>T</sup> (=KCCM 90517<sup>T</sup>=JCM 36585<sup>T</sup>). In addition, <i>Q. aerophila</i> GH25<sup>T</sup> and <i>Q. pacifica</i> NZ-96<sup>T</sup> were found to be the same species based on a polyphasic approach. Therefore, we propose the reclassification of <i>Q. aerophila</i> as a later heterotypic synonym of <i>Q. pacifica</i>.
Authors
- Jy Young Choi (ORCID: https://orcid.org/0000-0001-6169-346X)
- Byung Cheol Cho (ORCID: https://orcid.org/0009-0004-7877-2534)
- Won Sang Lee (ORCID: https://orcid.org/0000-0002-1074-7672)
- Chung Yeon Hwang (ORCID: https://orcid.org/0000-0001-9861-0197)
- Sukyoung Yun (ORCID: https://orcid.org/0000-0003-0778-7259)
- Bo Min Lee (ORCID: https://orcid.org/0009-0002-1253-6809)
- S. Y. Lee (ORCID: https://orcid.org/0009-0006-2704-8946)
- Ami Rho (ORCID: https://orcid.org/0009-0004-2668-7485)
Institutions
- Seoul National University (KR)
- Korea Polar Research Institute (KR)
Publication Details
- Journal
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Published
- 2025-03-13
- DOI
- https://doi.org/10.1099/ijsem.0.006713
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Korea Institute of Marine Science and Technology promotion