Description of Qipengyuania profunda sp. nov., isolated from deep seawater of the Amundsen Sea (Antarctica), and reclassification of Qipengyuania aerophila Liu et al. 2022 as a later heterotypic synonym of Qipengyuania pacifica Tareen et al. 2022

Gram-stain-negative, aerobic, rod-shaped bacterial strains, designated HL-TH1<sup>T</sup> and HL-TH5, were isolated from deep seawater (1127 m depth) of the Amundsen Sea, Antarctica. Phylogenetic analyses based on the 16S rRNA gene sequence revealed that strains HL-TH1<sup>T</sup> and HL-TH5 were members of the genus <i>Qipengyuania</i> with close relatives <i>Qipengyuania aerophila</i> GH25<sup>T</sup> (99.3%), <i>Qipengyuania pacifica</i> NZ-96<sup>T</sup> (99.3%), <i>Qipengyuania profundimaris</i> G39<sup>T</sup> (99.1%) and <i>Qipengyuania citrea</i> RE35F/1<sup>T</sup> (98.8%). The complete genome sequences of strains HL-TH1<sup>T</sup> and HL-TH5 comprised a chromosome of 3.2 Mbp and a plasmid of 0.1 Mbp, with DNA G+C content of 64.1%. The whole genome-based comparisons using the average nt identity and digital DNA-DNA hybridization values revealed that both strains belonged to the same genomic species but were clearly discriminated (79.4-85.8% and 21.9-29.3%, respectively) from their close relatives in the genus <i>Qipengyuania</i>. Both strains showed optimal growth at 30 °C, pH 6.5-7.0 and 1.5-2.5% sea salts. The major fatty acids of both strains were C<sub>18:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>18:1</sub> <i> ω</i>7<i>c</i> (37.8-38.4%), C<sub>17:1</sub> <i> ω</i>6<i>c</i> (18.1-19.7%) and C<sub>16:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>16:1</sub> <i> ω</i>7<i>c</i> (12.3-16.7%). The major isoprenoid quinone was ubiquinone-10. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and two unidentified lipids. Hence, we propose that strains HL-TH1<sup>T</sup> and HL-TH5 are assigned to a novel species belonging to the genus <i>Qipengyuania</i>, for which the name <i>Qipengyuania profunda</i> sp. nov. is proposed. The type strain is HL-TH1<sup>T</sup> (=KCCM 90517<sup>T</sup>=JCM 36585<sup>T</sup>). In addition, <i>Q. aerophila</i> GH25<sup>T</sup> and <i>Q. pacifica</i> NZ-96<sup>T</sup> were found to be the same species based on a polyphasic approach. Therefore, we propose the reclassification of <i>Q. aerophila</i> as a later heterotypic synonym of <i>Q. pacifica</i>.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-03-13
DOI
https://doi.org/10.1099/ijsem.0.006713
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Description of Qipengyuania profunda sp. nov., isolated from deep seawater of the Amundsen Sea (Antarctica), and reclassification of Qipengyuania aerophila Liu et al. 2022 as a later heterotypic synonym of Qipengyuania pacifica Tareen et al. 2022

Jy Young Choi, Byung Cheol Cho, Won Sang Lee, Chung Yeon Hwang et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Description of Qipengyuania profunda sp. nov., isolated from deep seawater of the Amundsen Sea (Antarctica), and reclassification of Qipengyuania aerophila Liu et al. 2022 as a later heterotypic synonym of Qipengyuania pacifica Tareen et al. 2022

Jy Young Choi, Byung Cheol Cho, Won Sang Lee, Chung Yeon Hwang, Sukyoung Yun, Bo Min Lee, S. Y. Lee, Ami Rho
article en

Abstract

Gram-stain-negative, aerobic, rod-shaped bacterial strains, designated HL-TH1<sup>T</sup> and HL-TH5, were isolated from deep seawater (1127 m depth) of the Amundsen Sea, Antarctica. Phylogenetic analyses based on the 16S rRNA gene sequence revealed that strains HL-TH1<sup>T</sup> and HL-TH5 were members of the genus <i>Qipengyuania</i> with close relatives <i>Qipengyuania aerophila</i> GH25<sup>T</sup> (99.3%), <i>Qipengyuania pacifica</i> NZ-96<sup>T</sup> (99.3%), <i>Qipengyuania profundimaris</i> G39<sup>T</sup> (99.1%) and <i>Qipengyuania citrea</i> RE35F/1<sup>T</sup> (98.8%). The complete genome sequences of strains HL-TH1<sup>T</sup> and HL-TH5 comprised a chromosome of 3.2 Mbp and a plasmid of 0.1 Mbp, with DNA G+C content of 64.1%. The whole genome-based comparisons using the average nt identity and digital DNA-DNA hybridization values revealed that both strains belonged to the same genomic species but were clearly discriminated (79.4-85.8% and 21.9-29.3%, respectively) from their close relatives in the genus <i>Qipengyuania</i>. Both strains showed optimal growth at 30 °C, pH 6.5-7.0 and 1.5-2.5% sea salts. The major fatty acids of both strains were C<sub>18:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>18:1</sub> <i> ω</i>7<i>c</i> (37.8-38.4%), C<sub>17:1</sub> <i> ω</i>6<i>c</i> (18.1-19.7%) and C<sub>16:1</sub> <i> ω</i>6<i>c</i> and/or C<sub>16:1</sub> <i> ω</i>7<i>c</i> (12.3-16.7%). The major isoprenoid quinone was ubiquinone-10. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and two unidentified lipids. Hence, we propose that strains HL-TH1<sup>T</sup> and HL-TH5 are assigned to a novel species belonging to the genus <i>Qipengyuania</i>, for which the name <i>Qipengyuania profunda</i> sp. nov. is proposed. The type strain is HL-TH1<sup>T</sup> (=KCCM 90517<sup>T</sup>=JCM 36585<sup>T</sup>). In addition, <i>Q. aerophila</i> GH25<sup>T</sup> and <i>Q. pacifica</i> NZ-96<sup>T</sup> were found to be the same species based on a polyphasic approach. Therefore, we propose the reclassification of <i>Q. aerophila</i> as a later heterotypic synonym of <i>Q. pacifica</i>.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(3)
Seoul National University (KR), Korea Polar Research Institute (KR)
Korea Institute of Marine Science and Technology promotion
Life below water
Openalex Percentile: Top 96%
Genomics and Phylogenetic Studies
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