Genomic Landscape of Breast Cancer: Study Across Diverse Ethnic Groups

<b>Background</b>: Breast cancer (BC) is the most common cancer among women worldwide, with incidence and mortality rates varying across ethnic groups due to sociodemographic, clinicopathological, and genomic differences. This study aimed to characterize the genomic landscape of BC in diverse ethnic groups using computational tools to explore these variations. <b>Methodology</b>: cBioPortal was used to analyze genomic, clinicopathological, and sociodemographic data from 1084 BC samples. Mutated genes were classified based on GeneCards platform data. Enrichment analysis was performed with CancerHallmarks, and genes not found were compared with MSigDB's Hallmark Gene Sets. Genes absent from both were further analyzed using NDEx through Cytoscape.org to explore their role in cancer. <b>Results</b>: Significant differences (<i>p</i> < 0.05) were observed in sex, tumor subtypes, genetic ancestry, median of the fraction of the altered genome, mutation count, and mutation frequencies of genes across ethnic groups. We identified the most frequently mutated genes. Some of these genes were found to be associated with classic cancer hallmarks, such as replicative immortality, sustained proliferative signaling, and the evasion of growth suppressors. However, the exact role of some of these genes in cancer remains unclear, highlighting the need for further research to better understand their involvement in tumor biology. <b>Conclusions</b>: This study identified significant clinicopathological and genomic variations in BC across ethnic groups. While key genes associated with cancer hallmarks were found, the incomplete characterization of some highlights the need for further research, especially focusing on ethnic groups, to understand their role in tumor biology and improve personalized treatments.

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Journal
Diseases
Published
2025-03-17
DOI
https://doi.org/10.3390/diseases13030086
Citations
1
Primary Topic
Bioinformatics and Genomic Networks
Type
article
Field-Weighted Citation Impact
0.81
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article

Genomic Landscape of Breast Cancer: Study Across Diverse Ethnic Groups

Asbiel Felipe Garibaldi-Ríos, José Elías García‐Ortíz, Alicia Rivera-Cameras, Luis E. Figuera et al.
1 citations
Diseases
Bioinformatics and Genomic Networks
0.81
article

Genomic Landscape of Breast Cancer: Study Across Diverse Ethnic Groups

Asbiel Felipe Garibaldi-Ríos, José Elías García‐Ortíz, Alicia Rivera-Cameras, Luis E. Figuera, Ana Marı́a Puebla-Pérez, Blanca Miriam Torres-Mendoza, Martha Patricia Gallegos‐Arreola, María Teresa Magaña‐Torres, Guadalupe Ávalos-Navarro, Ingrid Patricia Dávalos‐Rodríguez, Guillermo Moisés Zúñiga‐González, Mónica Alejandra Rosales‐Reynoso, Belinda Claudia Gómez‐Meda, Irving Alejandro Carrillo-Dávila, Patricia Montserrat García-Verdín
article en
1 citations

Abstract

<b>Background</b>: Breast cancer (BC) is the most common cancer among women worldwide, with incidence and mortality rates varying across ethnic groups due to sociodemographic, clinicopathological, and genomic differences. This study aimed to characterize the genomic landscape of BC in diverse ethnic groups using computational tools to explore these variations. <b>Methodology</b>: cBioPortal was used to analyze genomic, clinicopathological, and sociodemographic data from 1084 BC samples. Mutated genes were classified based on GeneCards platform data. Enrichment analysis was performed with CancerHallmarks, and genes not found were compared with MSigDB's Hallmark Gene Sets. Genes absent from both were further analyzed using NDEx through Cytoscape.org to explore their role in cancer. <b>Results</b>: Significant differences (<i>p</i> < 0.05) were observed in sex, tumor subtypes, genetic ancestry, median of the fraction of the altered genome, mutation count, and mutation frequencies of genes across ethnic groups. We identified the most frequently mutated genes. Some of these genes were found to be associated with classic cancer hallmarks, such as replicative immortality, sustained proliferative signaling, and the evasion of growth suppressors. However, the exact role of some of these genes in cancer remains unclear, highlighting the need for further research to better understand their involvement in tumor biology. <b>Conclusions</b>: This study identified significant clinicopathological and genomic variations in BC across ethnic groups. While key genes associated with cancer hallmarks were found, the incomplete characterization of some highlights the need for further research, especially focusing on ethnic groups, to understand their role in tumor biology and improve personalized treatments.

DiseasesVol. 13(3)
Universidad Autónoma de Guadalajara (MX), Mexican Social Security Institute (MX), Universidad de Guadalajara (MX)
Good health and well-being
Openalex Percentile: Top 30%
Bioinformatics and Genomic Networks
0.81
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