Transfer learning for accelerated failure time model with microarray data

In simulation studies, the transfer learning method for the AFT model can correctly identify a small number of genes, its estimation error is smaller than the estimation error obtained without using the source cohorts. Furthermore, the proposed method demonstrates satisfactory accuracy and robustness in addressing heterogeneity across the cohorts compared to the method that directly combines the target and the source cohorts in the AFT model. We analyze the GSE88770 and GSE25055 data using the proposed method. The selected genes are relatively stable, and the proposed method can make an overall satisfactory risk prediction.

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Publication Details

Journal
BMC Bioinformatics
Published
2025-03-17
DOI
https://doi.org/10.1186/s12859-025-06056-w
Citations
1
Primary Topic
Gene expression and cancer classification
Type
article
Field-Weighted Citation Impact
0.81
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article

Transfer learning for accelerated failure time model with microarray data

Zhengyang Yu, Junshan Shen, Yan-Bo Pei
1 citations
BMC Bioinformatics
Gene expression and cancer classification
0.81
article

Transfer learning for accelerated failure time model with microarray data

Zhengyang Yu, Junshan Shen, Yan-Bo Pei
article en
1 citations

Abstract

In simulation studies, the transfer learning method for the AFT model can correctly identify a small number of genes, its estimation error is smaller than the estimation error obtained without using the source cohorts. Furthermore, the proposed method demonstrates satisfactory accuracy and robustness in addressing heterogeneity across the cohorts compared to the method that directly combines the target and the source cohorts in the AFT model. We analyze the GSE88770 and GSE25055 data using the proposed method. The selected genes are relatively stable, and the proposed method can make an overall satisfactory risk prediction.

BMC BioinformaticsVol. 26(1)
Capital University of Economics and Business (CN)
Openalex Percentile: Top 30%
Gene expression and cancer classification
0.81
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Transfer learning for accelerated failure time model with microarray data — Zhengyang Yu, Junshan Shen, et al. · BMC Bioinformatics (2025) | TGRS Research Map | TGRS