xLSTM-UNet can be an Effective Backbone for 2D & 3D Biomedical Image Segmentation Better than its Mamba Counterparts

In this work, we replace Mamba in UMamba with recent xLSTM, and surprisingly, it works well! Convolutional Neural Networks (CNNs) and Vision Transformers (ViT) have been pivotal in biomedical image segmentation. Yet, their ability to manage long-range dependencies remains constrained by inherent locality and computational overhead. To overcome these challenges, in this technical report, we first propose xLSTM-UNet, a UNet structured deep learning neural network that lever-ages Vision-LSTM (xLSTM) as its backbone for medical image segmentation. xLSTM has recently been proposed as the successor of Long Short-Term Memory (LSTM) networks and has demonstrated superior performance compared to Transformers and State Space Models (SSMs) like Mamba in Neural Language Processing (NLP) and image classification (as demonstrated in Vision-LSTM, or ViL implementation). Here, we provide the first integration of xLSTM with image segmentation backbone-namely xLSTM-U, which extend the success of xLSTM in the biomedical image segmentation domain. By integrating the local feature extraction strengths of convolutional layers with the long-range dependency-capturing abilities of xLSTM, the proposed xLSTM-UNet offers a robust solution for comprehensive image analysis. We validate the efficacy of xLSTM-UNet through experiments. Our findings demonstrate that xLSTM-UNet consistently surpasses the performance of leading CNN-based, Transformer-based, and Mamba-based segmentation networks in multiple datasets in biomedical segmentation including organs in abdomen MRI, instruments in endoscopic images, and cells in microscopic images. With comprehensive experiments performed, this paper highlights the potential of xLSTM-based architectures in advancing biomedical image analysis in both 2D and 3D. We believe this new finding will be of interest to the research community and may inspire future studies. The code, models, and datasets are publicly available at https://github.com/tianrun-chen/xLSTM-UNet-PyTorchltreelmain.

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Published
2024-11-10
DOI
https://doi.org/10.1109/bhi62660.2024.10913659
Citations
29
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
11.72
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article

xLSTM-UNet can be an Effective Backbone for 2D & 3D Biomedical Image Segmentation Better than its Mamba Counterparts

Chaotao Ding, Tianrun Chen, Yan Wang, Lanyun Zhu et al.
29 citations
Radiomics and Machine Learning in Medical Imaging
11.72
article

xLSTM-UNet can be an Effective Backbone for 2D & 3D Biomedical Image Segmentation Better than its Mamba Counterparts

Chaotao Ding, Tianrun Chen, Yan Wang, Lanyun Zhu, Tao Xu, Deyi Ji, Zejian Li, Ying Zang
article en
29 citations

Abstract

In this work, we replace Mamba in UMamba with recent xLSTM, and surprisingly, it works well! Convolutional Neural Networks (CNNs) and Vision Transformers (ViT) have been pivotal in biomedical image segmentation. Yet, their ability to manage long-range dependencies remains constrained by inherent locality and computational overhead. To overcome these challenges, in this technical report, we first propose xLSTM-UNet, a UNet structured deep learning neural network that lever-ages Vision-LSTM (xLSTM) as its backbone for medical image segmentation. xLSTM has recently been proposed as the successor of Long Short-Term Memory (LSTM) networks and has demonstrated superior performance compared to Transformers and State Space Models (SSMs) like Mamba in Neural Language Processing (NLP) and image classification (as demonstrated in Vision-LSTM, or ViL implementation). Here, we provide the first integration of xLSTM with image segmentation backbone-namely xLSTM-U, which extend the success of xLSTM in the biomedical image segmentation domain. By integrating the local feature extraction strengths of convolutional layers with the long-range dependency-capturing abilities of xLSTM, the proposed xLSTM-UNet offers a robust solution for comprehensive image analysis. We validate the efficacy of xLSTM-UNet through experiments. Our findings demonstrate that xLSTM-UNet consistently surpasses the performance of leading CNN-based, Transformer-based, and Mamba-based segmentation networks in multiple datasets in biomedical segmentation including organs in abdomen MRI, instruments in endoscopic images, and cells in microscopic images. With comprehensive experiments performed, this paper highlights the potential of xLSTM-based architectures in advancing biomedical image analysis in both 2D and 3D. We believe this new finding will be of interest to the research community and may inspire future studies. The code, models, and datasets are publicly available at https://github.com/tianrun-chen/xLSTM-UNet-PyTorchltreelmain.

University of Science and Technology of China (CN), Singapore University of Technology and Design (SG), Zhejiang University of Science and Technology (CN), Huzhou Normal University (CN), Zhejiang University (CN), Beihang University (CN)
Openalex Percentile: Top 1%
Radiomics and Machine Learning in Medical Imaging
11.72
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