Lit-OTAR framework for extracting biological evidences from literature
The results are accessible through Europe PMC's SciLite web app (https://europepmc.org/) and its annotations API (https://europepmc.org/annotationsapi), as well as via the Open Targets Platform (https://platform.opentargets.org/). The daily pipeline is available at https://github.com/ML4LitS/otar-maintenance, and the Open Targets ETL processes are available at https://github.com/opentargets.
Authors
- Aravind Venkatesan (ORCID: https://orcid.org/0000-0003-4019-1940)
- Santosh Tirunagari (ORCID: https://orcid.org/0000-0002-9064-1965)
- Shyamasree Saha (ORCID: https://orcid.org/0000-0001-8867-1770)
- Miguel Carmona (ORCID: https://orcid.org/0000-0002-7582-4771)
- Melissa Harrison (ORCID: https://orcid.org/0000-0003-3523-4408)
- Ellen M. McDonagh (ORCID: https://orcid.org/0000-0001-5806-6174)
- Johanna McEntyre (ORCID: https://orcid.org/0000-0002-1611-6935)
- Annalisa Buniello (ORCID: https://orcid.org/0000-0002-4623-8642)
- Dániel Süveges (ORCID: https://orcid.org/0000-0003-4133-0447)
- David Ochoa (ORCID: https://orcid.org/0000-0003-1857-278X)
Institutions
- European Bioinformatics Institute (GB)
- Open Targets (GB)
- Bioinformatics Institute (RU)
- Wellcome Trust (GB)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-03-13
- DOI
- https://doi.org/10.1093/bioinformatics/btaf113
- Citations
- 8
- Primary Topic
- Biomedical Text Mining and Ontologies
- Type
- article
- Field-Weighted Citation Impact
- 6.45