P687: A master in mimicry: Expanding the renal phenotype of COL4A1-related disorders

SD 13.2, range 2-74).The Mendelian category generated the most VUS, which is expected given that it had the largest gene list; our expanded medically actionable gene list and the ACMG subset generated fewer VUS.Given the broader scope of analysis, variant filtration, variant classification and report preparation were substantially more time consuming in the intervention arm compared to the control arm.Variant filtration took 7.7 times longer per case (95% CI 5.3 to 11.3, p<0.0001; 65.7 vs 8.5 minutes on average per case).Variant classification took 13.3 times longer (95% CI 10.6 to 16.5, p<0.0001; 497.8 minutes vs 37.4 minutes on average per case), and report preparation took 3.3 times longer (95% CI 2.6 to 4.1, p<0.0001; 157.2 minutes vs 47.9 minutes on average per case).SFs related to monogenic disease risk were reported in 35.3% (49/139) of participants, ACMG-recommended SFs in 1.4% (2/139), carrier status in 89.3% (117/131), pharmacogenomic variants in 97.8% (135/138), and risk variants in 89.4% (118/132).Conclusion: While the yield of reportable SFs was high, this was accompanied by many non-reportable VUS, which substantially increased the time required for exome analysis and reporting.Analytic approaches that streamline variant prioritization and classification, such as through greater use of automation, may help promote the feasibility of offering a broad range of clinically relevant SFs.

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Publication Details

Journal
Genetics in Medicine Open
Published
2025-01-01
DOI
https://doi.org/10.1016/j.gimo.2025.103056
Citations
1
Primary Topic
Cell Adhesion Molecules Research
Type
article
Field-Weighted Citation Impact
1.62
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article

P687: A master in mimicry: Expanding the renal phenotype of COL4A1-related disorders

Sumit Punj, Tessa Pitman, C. Garland Vance, Emily Hendricks et al.
1 citations
Genetics in Medicine Open
Cell Adhesion Molecules Research
1.62
article

P687: A master in mimicry: Expanding the renal phenotype of COL4A1-related disorders

Sumit Punj, Tessa Pitman, C. Garland Vance, Emily Hendricks, Quinn Stein, Meg Hager, Maggie Westemeyer, E. L. Conway
article en
1 citations

Abstract

SD 13.2, range 2-74).The Mendelian category generated the most VUS, which is expected given that it had the largest gene list; our expanded medically actionable gene list and the ACMG subset generated fewer VUS.Given the broader scope of analysis, variant filtration, variant classification and report preparation were substantially more time consuming in the intervention arm compared to the control arm.Variant filtration took 7.7 times longer per case (95% CI 5.3 to 11.3, p<0.0001; 65.7 vs 8.5 minutes on average per case).Variant classification took 13.3 times longer (95% CI 10.6 to 16.5, p<0.0001; 497.8 minutes vs 37.4 minutes on average per case), and report preparation took 3.3 times longer (95% CI 2.6 to 4.1, p<0.0001; 157.2 minutes vs 47.9 minutes on average per case).SFs related to monogenic disease risk were reported in 35.3% (49/139) of participants, ACMG-recommended SFs in 1.4% (2/139), carrier status in 89.3% (117/131), pharmacogenomic variants in 97.8% (135/138), and risk variants in 89.4% (118/132).Conclusion: While the yield of reportable SFs was high, this was accompanied by many non-reportable VUS, which substantially increased the time required for exome analysis and reporting.Analytic approaches that streamline variant prioritization and classification, such as through greater use of automation, may help promote the feasibility of offering a broad range of clinically relevant SFs.

Genetics in Medicine OpenVol. 3
Natera (United States) (US)
Openalex Percentile: Top 22%
Cell Adhesion Molecules Research
1.62
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