P658: Prognostic factors for pediatric osteosarcoma

the ATXN2 expansion later confirmed by PCR.One case (GLS) also exhibited strong correlation, although the expansion was in a heterozygous state with no second variant identified.In the remaining 5 cases, limited or absent clinical data prevented adequate assessment of genotype-phenotype correlation.Conclusion: This study highlights the utility of ExpansionHunter for detecting STR expansions in ES data, emphasizing its potential in clinical diagnostic workflows.Of the 19 identified cases, 14 were supported after visual inspection, with 9 showing strong genotype-phenotype correlation, including cases linked to ATXN2, ATXN7, DMPK, and GLS.This represents an improved accuracy of approximately 0,2% in an unselected pool of ES samples.The exclusion of five likely false-positive results underscores the importance of integrating visual validation tools such as REViewer to ensure diagnostic accuracy.While ExpansionHunter proves to be a valuable tool for analyzing STR expansions, its application would benefit from further optimization to reduce false-positive rates in ES.This real-world evaluation supports the integration of STR expansion analysis into routine diagnostic pipelines for inherited disorders.

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Publication Details

Journal
Genetics in Medicine Open
Published
2025-01-01
DOI
https://doi.org/10.1016/j.gimo.2025.103027
Primary Topic
Sarcoma Diagnosis and Treatment
Type
article
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article

P658: Prognostic factors for pediatric osteosarcoma

Ariel Long, Jacquelyn Crane, Karen Huang, Marilyn M. Li et al.
Genetics in Medicine Open
Sarcoma Diagnosis and Treatment
article

P658: Prognostic factors for pediatric osteosarcoma

Ariel Long, Jacquelyn Crane, Karen Huang, Marilyn M. Li, Theodore W. Laetsch, Rachel Hurley, Lauren Gutstein, Zhiming Zhou, Feng Xu, Allyson Derry, Munashe Holloman
article en

Abstract

the ATXN2 expansion later confirmed by PCR.One case (GLS) also exhibited strong correlation, although the expansion was in a heterozygous state with no second variant identified.In the remaining 5 cases, limited or absent clinical data prevented adequate assessment of genotype-phenotype correlation.Conclusion: This study highlights the utility of ExpansionHunter for detecting STR expansions in ES data, emphasizing its potential in clinical diagnostic workflows.Of the 19 identified cases, 14 were supported after visual inspection, with 9 showing strong genotype-phenotype correlation, including cases linked to ATXN2, ATXN7, DMPK, and GLS.This represents an improved accuracy of approximately 0,2% in an unselected pool of ES samples.The exclusion of five likely false-positive results underscores the importance of integrating visual validation tools such as REViewer to ensure diagnostic accuracy.While ExpansionHunter proves to be a valuable tool for analyzing STR expansions, its application would benefit from further optimization to reduce false-positive rates in ES.This real-world evaluation supports the integration of STR expansion analysis into routine diagnostic pipelines for inherited disorders.

Genetics in Medicine OpenVol. 3
Children's Hospital of Philadelphia (US), Temple University (US)
Openalex Percentile: Top 93%
Sarcoma Diagnosis and Treatment
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P658: Prognostic factors for pediatric osteosarcoma — Ariel Long, Jacquelyn Crane, et al. · Genetics in Medicine Open (2025) | TGRS Research Map | TGRS