Practical recommendations for developing software for life science applications

Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scientists presents challenges to software adoption. In this Essay, we provide practical recommendations to guide bioimage analysts and developers in creating accessible and usable software for biological research. These recommendations are presented in three phases, covering software design, user involvement in early development stages and the importance of software dissemination. Additionally, two software development case studies are presented to highlight the practical application of these principles, showing how thoughtful development, user-centric design and thorough documentation can bridge the gap between software developers and biologists, fostering wider adoption of the software and enabling further scientific discovery.

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Institutions

Publication Details

Journal
Journal of Cell Science
Published
2025-03-01
DOI
https://doi.org/10.1242/jcs.263711
Citations
3
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
4.90

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article

Practical recommendations for developing software for life science applications

Guillaume Jacquemet, Stefania Marcotti, Joanna W. Pylvänäinen
3 citations
Journal of Cell Science
Cell Image Analysis Techniques
4.90
article

Practical recommendations for developing software for life science applications

Guillaume Jacquemet, Stefania Marcotti, Joanna W. Pylvänäinen
article en
3 citations

Abstract

Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scientists presents challenges to software adoption. In this Essay, we provide practical recommendations to guide bioimage analysts and developers in creating accessible and usable software for biological research. These recommendations are presented in three phases, covering software design, user involvement in early development stages and the importance of software dissemination. Additionally, two software development case studies are presented to highlight the practical application of these principles, showing how thoughtful development, user-centric design and thorough documentation can bridge the gap between software developers and biologists, fostering wider adoption of the software and enabling further scientific discovery.

Journal of Cell ScienceVol. 138(5)
Åbo Akademi University (FI), University of Turku (FI), Turku Centre for Computer Science (FI), King's College London (GB)
Company of Biologists, Academy of Finland, Sigrid Juséliuksen Säätiö, Syöpäjärjestöt, Directorate for Biological Sciences, Biotechnology and Biological Sciences Research Council
Responsible consumption and production
Openalex Percentile: Top 6%
Cell Image Analysis Techniques
4.90
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