Practical recommendations for developing software for life science applications
Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scientists presents challenges to software adoption. In this Essay, we provide practical recommendations to guide bioimage analysts and developers in creating accessible and usable software for biological research. These recommendations are presented in three phases, covering software design, user involvement in early development stages and the importance of software dissemination. Additionally, two software development case studies are presented to highlight the practical application of these principles, showing how thoughtful development, user-centric design and thorough documentation can bridge the gap between software developers and biologists, fostering wider adoption of the software and enabling further scientific discovery.
Authors
- Guillaume Jacquemet (ORCID: https://orcid.org/0000-0002-9286-920X)
- Stefania Marcotti (ORCID: https://orcid.org/0000-0002-2877-0133)
- Joanna W. Pylvänäinen (ORCID: https://orcid.org/0000-0002-3540-5150)
Institutions
- Åbo Akademi University (FI)
- University of Turku (FI)
- Turku Centre for Computer Science (FI)
- King's College London (GB)
Publication Details
- Journal
- Journal of Cell Science
- Published
- 2025-03-01
- DOI
- https://doi.org/10.1242/jcs.263711
- Citations
- 3
- Primary Topic
- Cell Image Analysis Techniques
- Type
- article
- Field-Weighted Citation Impact
- 4.90
Funders
- Company of Biologists
- Academy of Finland
- Sigrid Juséliuksen Säätiö
- Syöpäjärjestöt
- Directorate for Biological Sciences
- Biotechnology and Biological Sciences Research Council