Leveraging basecaller’s move table to generate a lightweight k-mer model for nanopore sequencing analysis

Authors

Sri Parameswaran (ORCID: https://orcid.org/0000-0003-0435-9080)
Hasindu Gamaarachchi (ORCID: https://orcid.org/0000-0002-9034-9905)
Hiruna Samarakoon (ORCID: https://orcid.org/0000-0002-5812-1046)
Yuk Kei Wan (ORCID: https://orcid.org/0000-0003-1774-261X)
Jonathan Göke (ORCID: https://orcid.org/0000-0002-0825-4991)
Ira W. Deveson (ORCID: https://orcid.org/0000-0003-3861-0472)

Institutions

Agency for Science, Technology and Research (SG)
The University of Sydney (AU)
Garvan Institute of Medical Research (AU)
National University of Singapore (SG)
UNSW Sydney (AU)
St Vincent's Clinic (AU)
National Cancer Centre Singapore (SG)
Murdoch Children's Research Institute (AU)
Genome Institute of Singapore (SG)

Publication Details

Journal: Bioinformatics
Published: 2025-03-14
DOI: https://doi.org/10.1093/bioinformatics/btaf111
Citations: 3
Primary Topic: RNA modifications and cancer
Type: article
Field-Weighted Citation Impact: 2.42

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article

Leveraging basecaller’s move table to generate a lightweight k-mer model for nanopore sequencing analysis

Sri Parameswaran, Hasindu Gamaarachchi, Hiruna Samarakoon, Yuk Kei Wan et al.

Mar 14, 2025

3 citations

Bioinformatics

RNA modifications and cancer

2.42

article

Leveraging basecaller’s move table to generate a lightweight k-mer model for nanopore sequencing analysis

Sri Parameswaran, Hasindu Gamaarachchi, Hiruna Samarakoon, Yuk Kei Wan, Jonathan Göke, Ira W. Deveson

March 14, 2025article en

3 citations

Abstract

No abstract available for this paper.

BioinformaticsVol. 41(4)

Agency for Science, Technology and Research (SG), The University of Sydney (AU), Garvan Institute of Medical Research (AU), National University of Singapore (SG), UNSW Sydney (AU), St Vincent's Clinic (AU), National Cancer Centre Singapore (SG), Murdoch Children's Research Institute (AU), Genome Institute of Singapore (SG)

Openalex Percentile: Top 13%

RNA modifications and cancer

2.42

DOI Open Access PDF OpenAlex

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Leveraging basecaller’s move table to generate a lightweight k-mer model for nanopore sequencing analysis — Sri Parameswaran, Hasindu Gamaarachchi, et al. · Bioinformatics (2025) | TGRS Research Map | TGRS