Deformable Graph Transformer

Transformer-based models have recently shown success in representation learning on graph-structured data beyond natural language processing and computer vision. However, the success is limited to small-scale graphs due to the drawbacks of full dot-product attention on graphs such as the quadratic complexity with respect to the number of nodes and message aggregation from enormous irrelevant nodes. To address these issues, we propose Deformable Graph Transformer (DGT) that performs sparse attention via dynamically selected relevant nodes for efficiently handling large-scale graphs with a linear complexity in the number of nodes. Specifically, our framework first constructs multiple node sequences with various criteria to consider both structural and semantic proximity. Then, combining with our learnable Katz Positional Encodings, the sparse attention is applied to the node sequences for learning node representations with a significantly reduced computational cost. Extensive experiments demonstrate that our DGT achieves superior performance on 7 graph benchmark datasets with 2.5 $\sim$∼ 449 times less computational cost compared to transformer-based graph models with full attention.

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Publication Details

Journal
IEEE Transactions on Pattern Analysis and Machine Intelligence
Published
2025-03-14
DOI
https://doi.org/10.1109/tpami.2025.3550281
Citations
6
Primary Topic
Advanced Computing and Algorithms
Type
article
Field-Weighted Citation Impact
37.06
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article

Deformable Graph Transformer

Seongjun Yun, Jisu Jeong, Jung-Woo Ha, Jaewoo Kang et al.
6 citations
IEEE Transactions on Pattern Analysis and Machine Intelligence
Advanced Computing and Algorithms
37.06
article

Deformable Graph Transformer

Seongjun Yun, Jisu Jeong, Jung-Woo Ha, Jaewoo Kang, Hyunwoo J. Kim, Kyung-Min Kim, Jinyoung Park, Hyeonjin Park
article en
6 citations

Abstract

Transformer-based models have recently shown success in representation learning on graph-structured data beyond natural language processing and computer vision. However, the success is limited to small-scale graphs due to the drawbacks of full dot-product attention on graphs such as the quadratic complexity with respect to the number of nodes and message aggregation from enormous irrelevant nodes. To address these issues, we propose Deformable Graph Transformer (DGT) that performs sparse attention via dynamically selected relevant nodes for efficiently handling large-scale graphs with a linear complexity in the number of nodes. Specifically, our framework first constructs multiple node sequences with various criteria to consider both structural and semantic proximity. Then, combining with our learnable Katz Positional Encodings, the sparse attention is applied to the node sequences for learning node representations with a significantly reduced computational cost. Extensive experiments demonstrate that our DGT achieves superior performance on 7 graph benchmark datasets with 2.5 $\sim$∼ 449 times less computational cost compared to transformer-based graph models with full attention.

IEEE Transactions on Pattern Analysis and Machine IntelligenceVol. 47(7)
Amazon (United States) (US), Korea Advanced Institute of Science and Technology (KR), Korea University (KR), Naver (South Korea) (KR)
Openalex Percentile: Top 0%
Advanced Computing and Algorithms
37.06
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