Scalable training of trustworthy and energy-efficient predictive graph foundation models for atomistic materials modeling: a case study with HydraGNN

We present our work on developing and training scalable, trustworthy, and energy-efficient predictive graph foundation models (GFMs) using HydraGNN, a multi-headed graph convolutional neural network architecture. HydraGNN expands the boundaries of graph neural network (GNN) computations in both training scale and data diversity. It abstracts over message passing algorithms, allowing both reproduction of and comparison across algorithmic innovations that define nearest-neighbor convolution in GNNs. This work discusses a series of optimizations that have allowed scaling up the GFMs training to tens of thousands of GPUs on datasets consisting of hundreds of millions of graphs. Our GFMs use multitask learning (MTL) to simultaneously learn graph-level and node-level properties of atomistic structures, such as energy and atomic forces. Using over 154 million atomistic structures for training, we illustrate the performance of our approach along with the lessons learned on two state-of-the-art US Department of Energy (US-DOE) supercomputers, namely the Perlmutter petascale system at the National Energy Research Scientific Computing Center and the Frontier exascale system at Oak Ridge Leadership Computing Facility. The HydraGNN architecture enables the GFM to achieve near-linear strong scaling performance using more than 2000 GPUs on Perlmutter and 16,000 GPUs on Frontier.

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Publication Details

Journal
The Journal of Supercomputing
Published
2025-03-14
DOI
https://doi.org/10.1007/s11227-025-07029-9
Citations
6
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
3.11

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article

Scalable training of trustworthy and energy-efficient predictive graph foundation models for atomistic materials modeling: a case study with HydraGNN

Pei Zhang, Massimiliano Lupo Pasini, Kshitij Mehta, David W. Rogers et al.
6 citations
The Journal of Supercomputing
Machine Learning in Materials Science
3.11
article

Scalable training of trustworthy and energy-efficient predictive graph foundation models for atomistic materials modeling: a case study with HydraGNN

Pei Zhang, Massimiliano Lupo Pasini, Kshitij Mehta, David W. Rogers, Jong Youl Choi, Jordà Polo, Khaled Z. Ibrahim, Prasanna Balaprakash, Ashwin M. Aji, Jonghyun Bae, Karl W. Schulz
article en
6 citations

Abstract

We present our work on developing and training scalable, trustworthy, and energy-efficient predictive graph foundation models (GFMs) using HydraGNN, a multi-headed graph convolutional neural network architecture. HydraGNN expands the boundaries of graph neural network (GNN) computations in both training scale and data diversity. It abstracts over message passing algorithms, allowing both reproduction of and comparison across algorithmic innovations that define nearest-neighbor convolution in GNNs. This work discusses a series of optimizations that have allowed scaling up the GFMs training to tens of thousands of GPUs on datasets consisting of hundreds of millions of graphs. Our GFMs use multitask learning (MTL) to simultaneously learn graph-level and node-level properties of atomistic structures, such as energy and atomic forces. Using over 154 million atomistic structures for training, we illustrate the performance of our approach along with the lessons learned on two state-of-the-art US Department of Energy (US-DOE) supercomputers, namely the Perlmutter petascale system at the National Energy Research Scientific Computing Center and the Frontier exascale system at Oak Ridge Leadership Computing Facility. The HydraGNN architecture enables the GFM to achieve near-linear strong scaling performance using more than 2000 GPUs on Perlmutter and 16,000 GPUs on Frontier.

The Journal of SupercomputingVol. 81(4)
Oak Ridge National Laboratory (US), Lawrence Berkeley National Laboratory (US), Advanced Micro Devices (United States) (US)
U.S. Department of Energy, Battelle, UT-Battelle, Office of Science, Laboratory Directed Research and Development, Oak Ridge National Laboratory
Affordable and clean energy
Openalex Percentile: Top 9%
Machine Learning in Materials Science
3.11
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