Evaluating the predictive accuracy of ion-channel models using data from multiple experimental designs

Mathematical models are increasingly being relied upon to provide quantitatively accurate predictions of cardiac electrophysiology. Many such models concern the behaviour of particular subcellular components (namely, ion channels) which, together, allow the propagation of electrical signals through heart-muscle tissue; that is, the firing of action potentials. In particular, I<sub>Kr</sub>, a voltage-sensitive potassium ion-channel current, is of interest owing to the central pore of its primary protein having a propensity to blockage by various small molecules. We use newly collected data obtained from an ensemble of voltage-clamp experiment designs (protocols) to validate the predictive accuracy of various dynamical models of I<sub>Kr</sub>. To do this, we fit models to each protocol individually and quantify the error in the resultant model predictions for other protocols. This allows the comparison of predictive accuracy for I<sub>Kr</sub> models under a diverse collection of previously unexplored dynamics. Our results highlight heterogeneity between parameter estimates obtained from different cells, suggesting the presence of latent effects not yet accounted for in our models. This heterogeneity has a significant effect on our parameter estimates and suggests routes for model improvement.This article is part of the theme issue 'Uncertainty quantification for healthcare and biological systems (Part 1)'.

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Publication Details

Journal
Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences
Published
2025-03-13
DOI
https://doi.org/10.1098/rsta.2024.0211
Citations
3
Primary Topic
Cardiac electrophysiology and arrhythmias
Type
article
Field-Weighted Citation Impact
4.16

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article

Evaluating the predictive accuracy of ion-channel models using data from multiple experimental designs

Simon Preston, Monique J. Windley, Chon Lok Lei, Adam P. Hill et al.
3 citations
Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences
Cardiac electrophysiology and arrhythmias
4.16
article

Evaluating the predictive accuracy of ion-channel models using data from multiple experimental designs

Simon Preston, Monique J. Windley, Chon Lok Lei, Adam P. Hill, Gary R. Mirams, Joseph G. Shuttleworth
article en
3 citations

Abstract

Mathematical models are increasingly being relied upon to provide quantitatively accurate predictions of cardiac electrophysiology. Many such models concern the behaviour of particular subcellular components (namely, ion channels) which, together, allow the propagation of electrical signals through heart-muscle tissue; that is, the firing of action potentials. In particular, I<sub>Kr</sub>, a voltage-sensitive potassium ion-channel current, is of interest owing to the central pore of its primary protein having a propensity to blockage by various small molecules. We use newly collected data obtained from an ensemble of voltage-clamp experiment designs (protocols) to validate the predictive accuracy of various dynamical models of I<sub>Kr</sub>. To do this, we fit models to each protocol individually and quantify the error in the resultant model predictions for other protocols. This allows the comparison of predictive accuracy for I<sub>Kr</sub> models under a diverse collection of previously unexplored dynamics. Our results highlight heterogeneity between parameter estimates obtained from different cells, suggesting the presence of latent effects not yet accounted for in our models. This heterogeneity has a significant effect on our parameter estimates and suggests routes for model improvement.This article is part of the theme issue 'Uncertainty quantification for healthcare and biological systems (Part 1)'.

Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering SciencesVol. 383(2292)
University of Nottingham (GB), Victor Chang Cardiac Research Institute (AU), University of Macau (MO), UNSW Sydney (AU)
Wellcome Trust, Universidade de Macau, Fundo para o Desenvolvimento das Ciências e da Tecnologia, Engineering and Physical Sciences Research Council, Australian Research Council
Openalex Percentile: Top 7%
Cardiac electrophysiology and arrhythmias
4.16
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