bayesTPC: Bayesian inference for thermal performance curves in R

Abstract Reliable predictions of ectotherm responses to climatic warming are important because many of these organisms perform important roles that can directly impact human society. Thermal performance curves (TPCs) provide useful information on the physiological constraints that limit the capacity of these temperature‐sensitive organisms to exist and grow. NLS pipelines for fitting TPCs are widely available, but these approaches rely on assumptions that can yield unreliable parameter estimates. We present bayesTPC , an R package for fitting TPCs to trait responses using the nimble language and machinery as the underlying engine for Markov Chain Monte Carlo. bayesTPC aims to support the adoption of Bayesian approaches in thermal physiology, and promote TPC fitting that adequately quantifies uncertainty.

Authors

Institutions

Publication Details

Journal
Methods in Ecology and Evolution
Published
2025-03-13
DOI
https://doi.org/10.1111/2041-210x.70004
Citations
5
Primary Topic
Hydrological Forecasting Using AI
Type
article
Field-Weighted Citation Impact
4.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

bayesTPC: Bayesian inference for thermal performance curves in R

Leah R. Johnson, Paul J. Huxley, Sean Sorek, John W. Smith
5 citations
Methods in Ecology and Evolution
Hydrological Forecasting Using AI
4.00
article

bayesTPC: Bayesian inference for thermal performance curves in R

Leah R. Johnson, Paul J. Huxley, Sean Sorek, John W. Smith
article en
5 citations

Abstract

Abstract Reliable predictions of ectotherm responses to climatic warming are important because many of these organisms perform important roles that can directly impact human society. Thermal performance curves (TPCs) provide useful information on the physiological constraints that limit the capacity of these temperature‐sensitive organisms to exist and grow. NLS pipelines for fitting TPCs are widely available, but these approaches rely on assumptions that can yield unreliable parameter estimates. We present bayesTPC , an R package for fitting TPCs to trait responses using the nimble language and machinery as the underlying engine for Markov Chain Monte Carlo. bayesTPC aims to support the adoption of Bayesian approaches in thermal physiology, and promote TPC fitting that adequately quantifies uncertainty.

Methods in Ecology and EvolutionVol. 16(4)
Montana State University (US), Virginia Tech (US)
National Science Foundation
Openalex Percentile: Top 7%
Hydrological Forecasting Using AI
4.00
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.