Obtaining Isotopically Labeled Preparations of Recombinant NAD+-Dependent Formate Dehydrogenase from Pathogen Staphylococcus aureus

NAD+-dependent formate dehydrogenase from Staphylococcus aureus (SauFDH) plays a key role in the biofilm growth of this pathogen. Under these conditions, the reaction catalyzed by SauFDH is the main source of energy in the cell. Therefore, highly effective SauFDH inhibitors can be used as a basis for the development of fundamentally new drugs against S.aureus biofilms. The Nuclear Magnetic Resonance method is one of the most powerful and effective for studying the interaction of promising inhibitors with the enzyme globule. In this work, we optimized the cultivation conditions for the effective introduction of 2H, 13C and 15N isotopes into the enzyme, both individually and together. MALDI/TOF/TOF mass spectra of peptides of isotopically labeled enzyme preparations after tryptic hydrolysis of samples SauFDH 2H, SauFDH 2H,15N,12C and SauFDH 2H,15N,13C showed a uniform distribution of these isotopes in the protein molecule with a degree of enrichment of at least 95% in 2H and not less than 98% for 13C and 15N. This level of isotope enrichment is the maximum achievable in a research laboratory and is completely sufficient for NMR experiments.

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Journal
Applied Biochemistry and Microbiology
Published
2024-12-01
DOI
https://doi.org/10.1134/s0003683824700066
Primary Topic
Chemical Reactions and Isotopes
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article
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article

Obtaining Isotopically Labeled Preparations of Recombinant NAD+-Dependent Formate Dehydrogenase from Pathogen Staphylococcus aureus

D. L. Atroshenko, Vladimir I. Polshakov, T. S. Iurchenko, A. A. Pometun et al.
Applied Biochemistry and Microbiology
Chemical Reactions and Isotopes
article

Obtaining Isotopically Labeled Preparations of Recombinant NAD+-Dependent Formate Dehydrogenase from Pathogen Staphylococcus aureus

D. L. Atroshenko, Vladimir I. Polshakov, T. S. Iurchenko, A. A. Pometun, С. С. Савин, В. И. Тишков, T. A. Chubar
article en

Abstract

NAD+-dependent formate dehydrogenase from Staphylococcus aureus (SauFDH) plays a key role in the biofilm growth of this pathogen. Under these conditions, the reaction catalyzed by SauFDH is the main source of energy in the cell. Therefore, highly effective SauFDH inhibitors can be used as a basis for the development of fundamentally new drugs against S.aureus biofilms. The Nuclear Magnetic Resonance method is one of the most powerful and effective for studying the interaction of promising inhibitors with the enzyme globule. In this work, we optimized the cultivation conditions for the effective introduction of 2H, 13C and 15N isotopes into the enzyme, both individually and together. MALDI/TOF/TOF mass spectra of peptides of isotopically labeled enzyme preparations after tryptic hydrolysis of samples SauFDH 2H, SauFDH 2H,15N,12C and SauFDH 2H,15N,13C showed a uniform distribution of these isotopes in the protein molecule with a degree of enrichment of at least 95% in 2H and not less than 98% for 13C and 15N. This level of isotope enrichment is the maximum achievable in a research laboratory and is completely sufficient for NMR experiments.

Applied Biochemistry and MicrobiologyVol. 60(7)
Russian Academy of Sciences (RU), Lomonosov Moscow State University (RU), Federal Research Centre «Fundamentals of Biotechnology» of the Russian Academy of Sciences (RU)
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Chemical Reactions and Isotopes
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Obtaining Isotopically Labeled Preparations of Recombinant NAD+-Dependent Formate Dehydrogenase from Pathogen Staphylococcus aureus — D. L. Atroshenko, Vladimir I. Polshakov, et al. · Applied Biochemistry and Microbiology (2024) | TGRS Research Map | TGRS