A chromosomal-level genome assembly of Begonia fimbristipula (Begoniaceae)

Begonia fimbristipula Hance (Begoniaceae) is a valuable medicinal herb that is classified as a protected species in Guangdong Province, China. In this study, we present a chromosome-level genome assembly of B. fimbristipula, aiming to facilitate its conservation and utilization. The genome was assembled using a combination of Oxford Nanopore long-read data and Illumina short-read data. The assembled genome size of B. fimbristipula is 462.11 Mb, with a scaffold N50 of 38.22 Mb. A total of 91.96% (424.94 Mb) of the sequences were anchored to 11 pseudochromosomes using Hi-C technology. The genome assembly exhibits a BUSCO completeness of 90.3% and an LTR Assembly Index (LAI) of 17.73. Genome annotation revealed 25,563 protein-coding genes and 274 tRNA genes. The high-quality chromosome-level assembly and annotation provide valuable insights into the genomic characteristics of B. fimbristipula, thereby offering essential resources for its conservation and economic utilization.

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Publication Details

Journal
Scientific Data
Published
2025-03-12
DOI
https://doi.org/10.1038/s41597-025-04768-5
Citations
2
Primary Topic
Plant and Fungal Species Descriptions
Type
article
Field-Weighted Citation Impact
1.61

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article

A chromosomal-level genome assembly of Begonia fimbristipula (Begoniaceae)

Zheng‐Feng Wang, Hai‐Fei Yan, Tian‐Wen Xiao
2 citations
Scientific Data
Plant and Fungal Species Descriptions
1.61
article

A chromosomal-level genome assembly of Begonia fimbristipula (Begoniaceae)

Zheng‐Feng Wang, Hai‐Fei Yan, Tian‐Wen Xiao
article en
2 citations

Abstract

Begonia fimbristipula Hance (Begoniaceae) is a valuable medicinal herb that is classified as a protected species in Guangdong Province, China. In this study, we present a chromosome-level genome assembly of B. fimbristipula, aiming to facilitate its conservation and utilization. The genome was assembled using a combination of Oxford Nanopore long-read data and Illumina short-read data. The assembled genome size of B. fimbristipula is 462.11 Mb, with a scaffold N50 of 38.22 Mb. A total of 91.96% (424.94 Mb) of the sequences were anchored to 11 pseudochromosomes using Hi-C technology. The genome assembly exhibits a BUSCO completeness of 90.3% and an LTR Assembly Index (LAI) of 17.73. Genome annotation revealed 25,563 protein-coding genes and 274 tRNA genes. The high-quality chromosome-level assembly and annotation provide valuable insights into the genomic characteristics of B. fimbristipula, thereby offering essential resources for its conservation and economic utilization.

Scientific DataVol. 12(1)
Chinese Academy of Sciences (CN), Beijing Botanical Garden (CN), South China Botanical Garden (CN), State Forestry and Grassland Administration (CN), China National Botanical Garden
Ministry of Science and Technology of the People's Republic of China
Life in Land
Openalex Percentile: Top 19%
Plant and Fungal Species Descriptions
1.61
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