Design of Supramolecular Tectons via Intramolecular S/Se⋅⋅⋅O<sub>NO2</sub> Chalcogen Bonding

Abstract A series of 2‐nitrochalcogenocyanato(hetero)arenes were synthesized by the reaction of 2‐nitrohalo(hetero)arenes with potassium thio‐ or selenocyanate. These compounds were characterized by NMR spectroscopy, high‐resolution mass spectrometry, and X‐ray crystallography. In the obtained crystal structures, strong intramolecular Ch⋅⋅⋅O NO2 (Ch=S, Se) chalcogen bonds between the chalcogen atom of the chalcogenocyanate moiety and the nitro group were revealed. These interactions prevent rotation of the nitro group, and thus stabilize the obtained 2‐nitrochalcogenocyanato(hetero)arenes in a distorted planar geometry. In addition, intermolecular Ch⋅⋅⋅N chalcogen bonds were observed in some structures. Both intra‐ and intermolecular interactions were studied using methods based on first‐principles and DFT approaches (e. g. QTAIM, IGMH, ELF, NBO). Two of the synthesized chalcogenocyanates namely, 4‐nitro‐5‐thiocyanatophthalonitrile ( 2a ) and 4‐nitro‐5‐selenocyanatophthalonitrile ( 2b ) were identified as promising supramolecular tectons for cocrystallizations with aromatic hydrocarbons, and four new cocrystals ( 2 a⋅ PhMe, 2 a⋅ o ‐XylH, 2 a⋅ p ‐XylH, and 2 b⋅ 1.5( p ‐XylH)) were obtained. X‐ray diffraction studies of these cocrystals demonstrated that in all cases molecules of the phthalonitrile ( 2 a or 2 b ) and the corresponding hydrocarbon are packed into infinity columnar stacks via π⋅⋅⋅π interactions, whereas intermolecular Ch⋅⋅⋅O/N ChBs bound them to form the final supramolecular architecture.

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Publication Details

Journal
Asian Journal of Organic Chemistry
Published
2025-03-11
DOI
https://doi.org/10.1002/ajoc.202500088
Citations
2
Primary Topic
Polydiacetylene-based materials and applications
Type
article
Field-Weighted Citation Impact
1.87
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article

Design of Supramolecular Tectons via Intramolecular S/Se⋅⋅⋅ONO2 Chalcogen Bonding

Лев Е. Зеленков, Vadim P. Boyarskiy, Alexander Sapegin, Artem V. Semenov et al.
2 citations
Asian Journal of Organic Chemistry
Polydiacetylene-based materials and applications
1.87
article

Design of Supramolecular Tectons via Intramolecular S/Se⋅⋅⋅ONO2 Chalcogen Bonding

Лев Е. Зеленков, Vadim P. Boyarskiy, Alexander Sapegin, Artem V. Semenov, Sergey V. Baykov, Mikhail Evgenievich Minyaev, Anton A. Shetnev, Maxim A. Bastrakov, Alexey M. Starosotnikov, Eugene A. Katlenok
article en
2 citations

Abstract

Abstract A series of 2‐nitrochalcogenocyanato(hetero)arenes were synthesized by the reaction of 2‐nitrohalo(hetero)arenes with potassium thio‐ or selenocyanate. These compounds were characterized by NMR spectroscopy, high‐resolution mass spectrometry, and X‐ray crystallography. In the obtained crystal structures, strong intramolecular Ch⋅⋅⋅O NO2 (Ch=S, Se) chalcogen bonds between the chalcogen atom of the chalcogenocyanate moiety and the nitro group were revealed. These interactions prevent rotation of the nitro group, and thus stabilize the obtained 2‐nitrochalcogenocyanato(hetero)arenes in a distorted planar geometry. In addition, intermolecular Ch⋅⋅⋅N chalcogen bonds were observed in some structures. Both intra‐ and intermolecular interactions were studied using methods based on first‐principles and DFT approaches (e. g. QTAIM, IGMH, ELF, NBO). Two of the synthesized chalcogenocyanates namely, 4‐nitro‐5‐thiocyanatophthalonitrile ( 2a ) and 4‐nitro‐5‐selenocyanatophthalonitrile ( 2b ) were identified as promising supramolecular tectons for cocrystallizations with aromatic hydrocarbons, and four new cocrystals ( 2 a⋅ PhMe, 2 a⋅ o ‐XylH, 2 a⋅ p ‐XylH, and 2 b⋅ 1.5( p ‐XylH)) were obtained. X‐ray diffraction studies of these cocrystals demonstrated that in all cases molecules of the phthalonitrile ( 2 a or 2 b ) and the corresponding hydrocarbon are packed into infinity columnar stacks via π⋅⋅⋅π interactions, whereas intermolecular Ch⋅⋅⋅O/N ChBs bound them to form the final supramolecular architecture.

Asian Journal of Organic ChemistryVol. 14(5)
Harbin Engineering University (CN), St Petersburg University (RU), N.D. Zelinsky Institute of Organic Chemistry (RU), Yaroslavl State Pedagogical University (RU)
Openalex Percentile: Top 17%
Polydiacetylene-based materials and applications
1.87
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