Novel Preprocessing-Based Sequence for Comparative MR Cervical Lymph Node Segmentation

<b>Background and Objective</b>: This study aims to utilize deep learning methods for the automatic segmentation of cervical lymph nodes in magnetic resonance images (MRIs), enhancing the speed and accuracy of diagnosing pathological masses in the neck and improving patient treatment processes. <b>Materials and Methods</b>: This study included 1346 MRI slices from 64 patients undergoing cervical lymph node dissection, biopsy, and preoperative contrast-enhanced neck MRI. A preprocessing model was used to crop and highlight lymph nodes, along with a method for automatic re-cropping. Two datasets were created from the cropped images-one with augmentation and one without-divided into 90% training and 10% validation sets. After preprocessing, the ResNet-50 images in the DeepLabv3+ encoder block were automatically segmented. <b>Results</b>: According to the results of the validation set, the mean IoU values for the DWI, T2, T1, T1+C, and ADC sequences in the dataset without augmentation created for cervical lymph node segmentation were 0.89, 0.88, 0.81, 0.85, and 0.80, respectively. In the augmented dataset, the average IoU values for all sequences were 0.91, 0.89, 0.85, 0.88, and 0.84. The DWI sequence showed the highest performance in the datasets with and without augmentation. <b>Conclusions</b>: Our preprocessing-based deep learning architectures successfully segmented cervical lymph nodes with high accuracy. This study is the first to explore automatic segmentation of the cervical lymph nodes using comprehensive neck MRI sequences. The proposed model can streamline the detection process, reducing the need for radiology expertise. Additionally, it offers a promising alternative to manual segmentation in radiotherapy, potentially enhancing treatment effectiveness.

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Publication Details

Journal
Journal of Clinical Medicine
Published
2025-03-07
DOI
https://doi.org/10.3390/jcm14061802
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
0.00

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article

Novel Preprocessing-Based Sequence for Comparative MR Cervical Lymph Node Segmentation

Ahmet Alkan, Metin Çeliker, Özlem Çelebi Erdivanlı, Tuğba Yemiş et al.
Journal of Clinical Medicine
Radiomics and Machine Learning in Medical Imaging
article

Novel Preprocessing-Based Sequence for Comparative MR Cervical Lymph Node Segmentation

Ahmet Alkan, Metin Çeliker, Özlem Çelebi Erdivanlı, Tuğba Yemiş, Fatma Beyazal Çeliker, Zerrin Özergin Çoşkun, Mehmet Birinci, Merve Solak, Esat Kaba, Oğuz Gül, E. Oğuz, Elif Ayten Tarakçı
article en

Abstract

<b>Background and Objective</b>: This study aims to utilize deep learning methods for the automatic segmentation of cervical lymph nodes in magnetic resonance images (MRIs), enhancing the speed and accuracy of diagnosing pathological masses in the neck and improving patient treatment processes. <b>Materials and Methods</b>: This study included 1346 MRI slices from 64 patients undergoing cervical lymph node dissection, biopsy, and preoperative contrast-enhanced neck MRI. A preprocessing model was used to crop and highlight lymph nodes, along with a method for automatic re-cropping. Two datasets were created from the cropped images-one with augmentation and one without-divided into 90% training and 10% validation sets. After preprocessing, the ResNet-50 images in the DeepLabv3+ encoder block were automatically segmented. <b>Results</b>: According to the results of the validation set, the mean IoU values for the DWI, T2, T1, T1+C, and ADC sequences in the dataset without augmentation created for cervical lymph node segmentation were 0.89, 0.88, 0.81, 0.85, and 0.80, respectively. In the augmented dataset, the average IoU values for all sequences were 0.91, 0.89, 0.85, 0.88, and 0.84. The DWI sequence showed the highest performance in the datasets with and without augmentation. <b>Conclusions</b>: Our preprocessing-based deep learning architectures successfully segmented cervical lymph nodes with high accuracy. This study is the first to explore automatic segmentation of the cervical lymph nodes using comprehensive neck MRI sequences. The proposed model can streamline the detection process, reducing the need for radiology expertise. Additionally, it offers a promising alternative to manual segmentation in radiotherapy, potentially enhancing treatment effectiveness.

Journal of Clinical MedicineVol. 14(6)
Recep Tayyip Erdoğan University (TR), Mustafa Kemal University (TR), Kahramanmaraş Sütçü İmam University (TR)
Recep Tayyip Erdogan Üniversitesi
Good health and well-being
Openalex Percentile: Top 94%
Radiomics and Machine Learning in Medical Imaging
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