Mechanistic and structural insights into the itaconate-producing <i>trans</i>-aconitate decarboxylase Tad1

Itaconic acid belongs to the high-value precursors for the production of biomass-based industrial compounds. It originates from the tricarboxylic acid cycle, and depending on the organism, it is produced by different biosynthetic routes. The basidiomycete fungus <i>Ustilago maydis</i> synthesizes itaconic acid via isomerization of <i>cis</i>-aconitic acid to <i>trans</i>-aconitic acid, and subsequent decarboxylation catalyzed by the <i>trans</i>-aconitate decarboxylase Tad1, which belongs to the aspartase/fumarase superfamily. Since no other decarboxylase has been identified within this protein superfamily, Tad1 constitutes a novel type of decarboxylase. Here, we present high-resolution crystal structures of Tad1, which, together with mutational analysis and nuclear magnetic resonance spectroscopy measurements, provide insight into the molecular mechanism of Tad1-dependent decarboxylation. Specifically, our study shows that decarboxylation is favored in acidic conditions, requires protonation as well as migration of a double bond, and coincides with structural rearrangements in the catalytic center. In summary, our study elucidates the molecular mechanism underlying a novel type of enzymatic decarboxylation and provides a starting point for protein engineering aimed at optimizing the efficient production of itaconic acid.

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Journal
PNAS Nexus
Published
2025-02-27
DOI
https://doi.org/10.1093/pnasnexus/pgaf059
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
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article

Mechanistic and structural insights into the itaconate-producing trans-aconitate decarboxylase Tad1

Christopher-Nils Mais, Wolfgang Buckel, Gert Bange, Marvin Christ et al.
PNAS Nexus
Enzyme Structure and Function
article

Mechanistic and structural insights into the itaconate-producing trans-aconitate decarboxylase Tad1

Christopher-Nils Mais, Wolfgang Buckel, Gert Bange, Marvin Christ, Michael Bölker, Johannes Freitag, Nicole Paczia, Wei Li, Liujuan Zheng
article en

Abstract

Itaconic acid belongs to the high-value precursors for the production of biomass-based industrial compounds. It originates from the tricarboxylic acid cycle, and depending on the organism, it is produced by different biosynthetic routes. The basidiomycete fungus <i>Ustilago maydis</i> synthesizes itaconic acid via isomerization of <i>cis</i>-aconitic acid to <i>trans</i>-aconitic acid, and subsequent decarboxylation catalyzed by the <i>trans</i>-aconitate decarboxylase Tad1, which belongs to the aspartase/fumarase superfamily. Since no other decarboxylase has been identified within this protein superfamily, Tad1 constitutes a novel type of decarboxylase. Here, we present high-resolution crystal structures of Tad1, which, together with mutational analysis and nuclear magnetic resonance spectroscopy measurements, provide insight into the molecular mechanism of Tad1-dependent decarboxylation. Specifically, our study shows that decarboxylation is favored in acidic conditions, requires protonation as well as migration of a double bond, and coincides with structural rearrangements in the catalytic center. In summary, our study elucidates the molecular mechanism underlying a novel type of enzymatic decarboxylation and provides a starting point for protein engineering aimed at optimizing the efficient production of itaconic acid.

PNAS NexusVol. 4(3)
Loewe Center for Synthetic Microbiology (DE), Max Planck Institute for Terrestrial Microbiology (DE)
European Research Council
Openalex Percentile: Top 97%
Enzyme Structure and Function
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