PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance

PathoSeq-QC is a command-line tool written in Python and R. The code is available at https://code.europa.eu/dighealth/pathoseq-qc.

Authors

Mauro Petrillo (ORCID: https://orcid.org/0000-0002-6782-4704)
Gabriele Leoni (ORCID: https://orcid.org/0000-0001-8269-3127)
Maddalena Querci (ORCID: https://orcid.org/0000-0002-0788-1627)
Sandra Coecke (ORCID: https://orcid.org/0000-0003-2773-6408)
Violeta Serra (ORCID: https://orcid.org/0000-0001-6620-1065)
Tobias Wiesenthal

Institutions

European Commission (BE)
Eidos (Italy) (IT)
Joint Research Centre (IT)
Joint Research Centre (DE)
Joint Research Centre (NL)
Eidon (Italy) (IT)

Publication Details

Journal: Bioinformatics
Published: 2025-03-07
DOI: https://doi.org/10.1093/bioinformatics/btaf102
Citations: 2
Primary Topic: Genomics and Phylogenetic Studies
Type: article
Field-Weighted Citation Impact: 1.61

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article

PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance

Mauro Petrillo, Gabriele Leoni, Maddalena Querci, Sandra Coecke et al.

Mar 7, 2025

2 citations

Bioinformatics

Genomics and Phylogenetic Studies

1.61

article

PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance

Mauro Petrillo, Gabriele Leoni, Maddalena Querci, Sandra Coecke, Violeta Serra, Tobias Wiesenthal

March 7, 2025article en

2 citations

Abstract

PathoSeq-QC is a command-line tool written in Python and R. The code is available at https://code.europa.eu/dighealth/pathoseq-qc.

BioinformaticsVol. 41(4)

European Commission (BE), Eidos (Italy) (IT), Joint Research Centre (IT), Joint Research Centre (DE), Joint Research Centre (NL), Eidon (Italy) (IT)

Openalex Percentile: Top 19%

Genomics and Phylogenetic Studies

1.61

DOI Open Access PDF OpenAlex

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PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance — Mauro Petrillo, Gabriele Leoni, et al. · Bioinformatics (2025) | TGRS Research Map | TGRS