Towards a holistic framework for multimodal LLM in 3D brain CT radiology report generation
Multi-modal large language models (MLLMs) have transformed the landscape of modern healthcare, with automated radiology report generation (RRG) emerging as a cutting-edge application. While 2D MLLM-based RRG has been well established, its utility for 3D medical images remains largely unexplored. In this regard, we curate the 3D-BrainCT dataset (18,885 text-scan pairs) and develop BrainGPT, a clinically visual instruction-tuned (CVIT) model designed for 3D CT RRG. While we notice that the traditional LLM metrics failed to gauge the diagnostic quality of the RRG, we propose feature-oriented radiology task evaluation (FORTE), an evaluation scheme that captures the clinical essence of the generated reports. Here we show that BrainGPT achieves an average FORTE F1-score of 0.71 (degree = 0.661; landmark = 0.706; feature = 0.693, and impression = 0.779) and 74% of BrainGPT-generated reports were indistinguishable from human-written ground truth in a Turing-like test. Together, our work establishes a comprehensive framework encompassing dataset curation, anatomy-aware model fine-tuning, and the development of robust evaluation metrics for the RRG. By sharing our experience in 3D MLLM-based RRG, we aim to accelerate the expedition in human-machine collaboration for next-generation healthcare.
Authors
- Shih‐Jen Chen (ORCID: https://orcid.org/0000-0001-9798-1578)
- Kao-Jung Chang (ORCID: https://orcid.org/0000-0002-2238-7387)
- Shih‐Hwa Chiou (ORCID: https://orcid.org/0000-0002-8651-5755)
- Yu‐Chun Chen (ORCID: https://orcid.org/0000-0002-4124-1949)
- Hsin‐Yu Wu (ORCID: https://orcid.org/0000-0001-8201-4286)
- Shih‐Pin Chen (ORCID: https://orcid.org/0000-0003-3492-9902)
- Jiing‐Feng Lirng (ORCID: https://orcid.org/0000-0003-4225-4239)
- Cheng-Yi Li
- Kai-Wei Chang (ORCID: https://orcid.org/0000-0001-5365-0072)
- Wenting Chen (ORCID: https://orcid.org/0000-0002-7457-9540)
- Ling Chen (ORCID: https://orcid.org/0009-0001-5351-8060)
- Cheng-Fu Yang (ORCID: https://orcid.org/0000-0002-6916-2142)
- Yi‐Ping Yang (ORCID: https://orcid.org/0000-0002-4629-5647)
- Hritik Bansal
Institutions
- National Yang Ming Chiao Tung University (TW)
- University of California, Los Angeles (US)
- City University of Hong Kong (HK)
- Taipei Veterans General Hospital (TW)
- Yuli Veterans Hospital (TW)
Publication Details
- Journal
- Nature Communications
- Published
- 2025-03-06
- DOI
- https://doi.org/10.1038/s41467-025-57426-0
- Citations
- 40
- Primary Topic
- Radiomics and Machine Learning in Medical Imaging
- Type
- article
- Field-Weighted Citation Impact
- 54.41
Funders
- U.S. Department of Veterans Affairs
- Shanghai Educational Development Foundation
- Taipei Veterans General Hospital
- National Science and Technology Council