Towards a holistic framework for multimodal LLM in 3D brain CT radiology report generation

Multi-modal large language models (MLLMs) have transformed the landscape of modern healthcare, with automated radiology report generation (RRG) emerging as a cutting-edge application. While 2D MLLM-based RRG has been well established, its utility for 3D medical images remains largely unexplored. In this regard, we curate the 3D-BrainCT dataset (18,885 text-scan pairs) and develop BrainGPT, a clinically visual instruction-tuned (CVIT) model designed for 3D CT RRG. While we notice that the traditional LLM metrics failed to gauge the diagnostic quality of the RRG, we propose feature-oriented radiology task evaluation (FORTE), an evaluation scheme that captures the clinical essence of the generated reports. Here we show that BrainGPT achieves an average FORTE F1-score of 0.71 (degree = 0.661; landmark = 0.706; feature = 0.693, and impression = 0.779) and 74% of BrainGPT-generated reports were indistinguishable from human-written ground truth in a Turing-like test. Together, our work establishes a comprehensive framework encompassing dataset curation, anatomy-aware model fine-tuning, and the development of robust evaluation metrics for the RRG. By sharing our experience in 3D MLLM-based RRG, we aim to accelerate the expedition in human-machine collaboration for next-generation healthcare.

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Publication Details

Journal
Nature Communications
Published
2025-03-06
DOI
https://doi.org/10.1038/s41467-025-57426-0
Citations
40
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
54.41

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article

Towards a holistic framework for multimodal LLM in 3D brain CT radiology report generation

Shih‐Jen Chen, Kao-Jung Chang, Shih‐Hwa Chiou, Yu‐Chun Chen et al.
40 citations
Nature Communications
Radiomics and Machine Learning in Medical Imaging
54.41
article

Towards a holistic framework for multimodal LLM in 3D brain CT radiology report generation

Shih‐Jen Chen, Kao-Jung Chang, Shih‐Hwa Chiou, Yu‐Chun Chen, Hsin‐Yu Wu, Shih‐Pin Chen, Jiing‐Feng Lirng, Cheng-Yi Li, Kai-Wei Chang, Wenting Chen, Ling Chen, Cheng-Fu Yang, Yi‐Ping Yang, Hritik Bansal
article en
40 citations

Abstract

Multi-modal large language models (MLLMs) have transformed the landscape of modern healthcare, with automated radiology report generation (RRG) emerging as a cutting-edge application. While 2D MLLM-based RRG has been well established, its utility for 3D medical images remains largely unexplored. In this regard, we curate the 3D-BrainCT dataset (18,885 text-scan pairs) and develop BrainGPT, a clinically visual instruction-tuned (CVIT) model designed for 3D CT RRG. While we notice that the traditional LLM metrics failed to gauge the diagnostic quality of the RRG, we propose feature-oriented radiology task evaluation (FORTE), an evaluation scheme that captures the clinical essence of the generated reports. Here we show that BrainGPT achieves an average FORTE F1-score of 0.71 (degree = 0.661; landmark = 0.706; feature = 0.693, and impression = 0.779) and 74% of BrainGPT-generated reports were indistinguishable from human-written ground truth in a Turing-like test. Together, our work establishes a comprehensive framework encompassing dataset curation, anatomy-aware model fine-tuning, and the development of robust evaluation metrics for the RRG. By sharing our experience in 3D MLLM-based RRG, we aim to accelerate the expedition in human-machine collaboration for next-generation healthcare.

Nature CommunicationsVol. 16(1)
National Yang Ming Chiao Tung University (TW), University of California, Los Angeles (US), City University of Hong Kong (HK), Taipei Veterans General Hospital (TW), Yuli Veterans Hospital (TW)
U.S. Department of Veterans Affairs, Shanghai Educational Development Foundation, Taipei Veterans General Hospital, National Science and Technology Council
Industry, innovation and infrastructure
Openalex Percentile: Top 0%
Radiomics and Machine Learning in Medical Imaging
54.41
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