Synthetic Genetic Elements Enable Rapid Characterization of Inorganic Carbon Uptake Systems in <i>Cupriavidus necator</i> H16

<i>Cupriavidus necator</i> H16 is a facultative chemolithotroph capable of using CO<sub>2</sub> as a carbon source, making it a promising organism for carbon-negative biomanufacturing of petroleum-based product alternatives. In contrast to model microbes, genetic engineering technologies are limited in <i>C. necator</i>, constraining its utility in basic and applied research. Here, we developed a genome engineering technology to efficiently mobilize, integrate, and express synthetic genetic elements (SGEs) in <i>C. necator</i>. We tested the chromosomal expression of four inducible promoters to optimize an engineered genetic landing pad for tunable gene expression. To demonstrate utility, we employed the SGE system to design, mobilize, and express eight heterologous inorganic carbon uptake pathways in <i>C. necator</i>. We demonstrated all inorganic carbon uptake systems' upregulated intracellular bicarbonate concentrations under heterotrophic conditions. This work establishes the utility of the SGE strategy for expedited integration and tunable expression of heterologous pathways, and enhances intracellular bicarbonate concentrations in <i>C. necator</i>.

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Publication Details

Journal
ACS Synthetic Biology
Published
2025-03-06
DOI
https://doi.org/10.1021/acssynbio.4c00869
Citations
2
Primary Topic
biodegradable polymer synthesis and properties
Type
article
Field-Weighted Citation Impact
1.19

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article

Synthetic Genetic Elements Enable Rapid Characterization of Inorganic Carbon Uptake Systems in Cupriavidus necator H16

Akira K. Nakamura, Emily M. Fulk, Farren J. Isaacs, Christopher W. Johnson
2 citations
ACS Synthetic Biology
biodegradable polymer synthesis and properties
1.19
article

Synthetic Genetic Elements Enable Rapid Characterization of Inorganic Carbon Uptake Systems in Cupriavidus necator H16

Akira K. Nakamura, Emily M. Fulk, Farren J. Isaacs, Christopher W. Johnson
article en
2 citations

Abstract

<i>Cupriavidus necator</i> H16 is a facultative chemolithotroph capable of using CO<sub>2</sub> as a carbon source, making it a promising organism for carbon-negative biomanufacturing of petroleum-based product alternatives. In contrast to model microbes, genetic engineering technologies are limited in <i>C. necator</i>, constraining its utility in basic and applied research. Here, we developed a genome engineering technology to efficiently mobilize, integrate, and express synthetic genetic elements (SGEs) in <i>C. necator</i>. We tested the chromosomal expression of four inducible promoters to optimize an engineered genetic landing pad for tunable gene expression. To demonstrate utility, we employed the SGE system to design, mobilize, and express eight heterologous inorganic carbon uptake pathways in <i>C. necator</i>. We demonstrated all inorganic carbon uptake systems' upregulated intracellular bicarbonate concentrations under heterotrophic conditions. This work establishes the utility of the SGE strategy for expedited integration and tunable expression of heterologous pathways, and enhances intracellular bicarbonate concentrations in <i>C. necator</i>.

ACS Synthetic BiologyVol. 14(3)
National Laboratory of the Rockies (US), Yale University (US), Institut thématique Génétique, génomique et bioinformatique (FR), Systems Biology Institute (JP), Renewable Energy Systems (United States) (US)
U.S. Department of Energy, Yale University, Office of Science, Biological and Environmental Research
Openalex Percentile: Top 24%
biodegradable polymer synthesis and properties
1.19
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Synthetic Genetic Elements Enable Rapid Characterization of Inorganic Carbon Uptake Systems in <i>Cupriavidus necator</i> H16 — Akira K. Nakamura, Emily M. Fulk, et al. · ACS Synthetic Biology (2025) | TGRS Research Map | TGRS