Ultra-sensitive detection of transposon insertions across multiple families by transposable element display sequencing
TE display sequencing is an ultra-sensitive, specific, simple, and cost-effective approach for investigating the rate and landscape of new TE insertions across multiple families in large-scale population experiments. We provide a step-by-step experimental protocol and ready-to-use bioinformatic pipelines to facilitate its straightforward implementation.
Authors
- Basile Leduque
- Leandro Quadrana (ORCID: https://orcid.org/0000-0001-6279-211X)
- Pol Vendrell‐Mir (ORCID: https://orcid.org/0000-0002-5695-5880)
Institutions
- Université Paris-Saclay (FR)
- Institut des Neurosciences Paris-Saclay (FR)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Institut des Sciences des Plantes de Paris Saclay (FR)
Publication Details
- Journal
- Genome biology
- Published
- 2025-03-06
- DOI
- https://doi.org/10.1186/s13059-025-03512-x
- Citations
- 5
- Primary Topic
- Chromosomal and Genetic Variations
- Type
- article
- Field-Weighted Citation Impact
- 8.75
Funders
- H2020 European Research Council