Evaluating seven bioinformatics platforms for tertiary analysis of genomic data from whole exome sequencing in a pilot group of patients
SeqOne, CentoCloud, and Franklin had the highest performance in automated variant prioritization, as they prioritized all variants. In relation to automated classification, Franklin showed a higher concordance with the reference and a lower number of discordances with clinical implications. In conclusion, Franklin emerges as the platform with the best overall performance. Anyway, further studies are needed to confirm these results.
Authors
- Julien Crettaz
- Otilia Martínez-Múgica Barbosa
- Nerea Bastida-Lertxundi
- Raquel Sáez-Villaverde
- Raquel Muguerza-Iraola
- Itxaso Martì (ORCID: https://orcid.org/0000-0003-0578-9568)
- Borja Laña-Ruíz
Institutions
- University of the Basque Country (ES)
- Biogipuzkoa Health Research Institute (ES)
- Osakidetza (ES)
Publication Details
- Journal
- Advances in Laboratory Medicine / Avances en Medicina de Laboratorio
- Published
- 2025-03-01
- DOI
- https://doi.org/10.1515/almed-2025-0031
- Citations
- 2
- Primary Topic
- Genomics and Rare Diseases
- Type
- article
- Field-Weighted Citation Impact
- 3.63