Assessment of 18 Years of Genetic Marker-Assisted Selection and Augmentation of Native Walleye in the Upper New River, Virginia, USA

Walleye Sander vitreus is a valued sportfish in eastern North America, including the upper New River of Virginia, where individuals can grow to a large size (>7 kg). After construction of dams, especially Claytor Dam in 1939, the population declined and non-native walleye were stocked. Stocking of non-native walleye was stopped in 1997, and molecular marker data showed that the presumptive native population had persisted. To restore the native stock, selection of broodstock candidates bearing native marker alleles and hatchery-based augmentation have been practiced over a 20-year period. We evaluated the success of the marker-assisted selection and hatchery-based augmentation program. Marker-assisted selection of native New River walleye began with mean frequencies of marker alleles at microsatellite loci Svi17 and Svi33 of ~30%, and continuing selection has driven marker allele frequencies to ~65–70%. Numbers of walleye collected in fall gillnet and spring electrofishing surveys were responsive to augmentations with hatchery fish 2–3 years earlier. Stocking was not practiced in 2012–2013, and a decrease in walleye catch rates was noted in 2016, suggesting that the native New River walleye population still depends upon hatchery-based augmentation. We recommend the development of a small panel of single nucleotide polymorphism markers for more rigorous selection of broodstock representative of the native walleye population.