Understanding the Role of <scp>RING</scp> ‐Between‐ <scp>RING E3</scp> Ligase of the Human Malaria Parasite
E3 ligases constitute an important component of proteostasis machinery, which plays a critical role in the survival of malaria parasites through post-translational modifications of their protein substrates. In contrast to humans, parasite E3 ligases have not been extensively studied. Here, we characterize a unique Plasmodium E3 ligase that has both RING and HECT-like features with zinc-coordinating domains. Plasmodium encodes a single RING-between-RING (RBR) E3 ligase that has evolutionarily diverged from human and other intracellular parasites. This RBR-E3 ligase is expressed throughout the erythrocytic phase of the P. falciparum lifecycle. Immunoprecipitation experiments showed that Pf RBR-E3 ligase catalyzes K6, K11, K48, and K63 mediated polyubiquitination, hinting towards its probable biological roles (DNA repair, proteasomal degradation, mitochondrial quality control). We observed that Pf RBR-E3 ligase interacts with UBCH5 and UBC13 family of E2-conjugating enzymes. Through mutational analysis in Pf RBR-E3 ligase, we identified residues in RING1 and RING2 domains that are critical for ubiquitination activity and its protein stability. Pf RBR-E3 ligase exhibits differences in immunofluorescence profile upon exposure of the parasite to different genotoxic (MMS) and proteotoxic (MG132, FCCP and artemisinin derivative) stress. Our study opens up avenues for exploring the client substrates of Pf RBR-E3 ligase and using this knowledge to design substrate-specific protein degradation-based alternative intervention strategies for malaria.
Authors
- Niti Kumar (ORCID: https://orcid.org/0000-0002-3786-2953)
- Aradhya Tripathi
- Richa Shukla
- Simmi Anjum
- Nishant Rai (ORCID: https://orcid.org/0000-0002-6108-2068)
- Mohammad Anas (ORCID: https://orcid.org/0000-0003-0850-0213)
- Shakil Ahmed (ORCID: https://orcid.org/0000-0002-5941-3534)
- Seema Vidyarthi
- Nirupa Chaurasia
- Girdhar Bhati
- Shagufa Nisrat Noorie
- Varsha Kumari
Institutions
- Central Drug Research Institute (IN)
- University of Illinois Chicago (US)
- Academy of Scientific and Innovative Research (IN)
Publication Details
- Journal
- Proteins Structure Function and Bioinformatics
- Published
- 2025-03-04
- DOI
- https://doi.org/10.1002/prot.26813
- Citations
- 1
- Primary Topic
- Ubiquitin and proteasome pathways
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- Department of Biotechnology, Ministry of Science and Technology, India