Mixed-layer lipidomes suggest offshore transport of energy-rich and essential lipids by cyclonic eddies

Abstract Mesoscale eddies are ubiquitous features in the ocean affecting the cycles of nutrients and carbon. Cyclonic eddies formed in Eastern Boundary Upwelling Systems can substantially modulate primary production by phytoplankton and the vertical and lateral export of organic carbon. However, the impact of eddy activity on the biochemical composition of eukaryotic phytoplankton, bacteria and archaea and associated consequences for carbon and energy flows are largely unknown. Here, we investigated the microbial lipidome in the surface ocean in and around a cyclonic eddy formed in the coastal upwelling system off Mauritania. We show that the eddy contained almost three times the amount of lipids compared to the surrounding open-ocean and coastal waters. The eddy lipid signature with energy-rich triacylglycerols and essential fatty acid-containing membrane lipids of eukaryotic phytoplankton origin was further significantly different from the ambient waters. Strong variability in lipid distributions within the eddy was related to differences in microbial community composition. Estimates indicate that in the Mauritanian upwelling area, as much as 9.7 ± 2.0 gigagrams of lipid carbon per year is delivered to the open ocean by coastal cyclonic eddies potentially fueling higher trophic levels and contributing to the maintenance of secondary productivity and carbon export offshore.