Network pharmacological evaluation of <i>Cressa cretica</i> L.- an integrated approach of modern and ancient pharmacology

<i>Cressa cretica</i> L. is immensely valuable in pharmacology. Computational approach through network pharmacology has been attempted to understand lead molecules of Cressa and their interactions with multiple targets. The phytochemical components of methanolic extracts of Cressa leaves were identified using GC-MS analysis, revealing 16 compounds. Using the identified lead molecules, target proteins were predicted using SWISS-target prediction and were analyzed using Cytoscape. This led to the identification of 56 candidate protein targets, which were used to construct a network using CytoHubba, Centiscape, MCODE, and KEGG pathways. The STRING network was created using Cytoscape for analyzing protein-protein interactions, and the top 5 genes were chosen from a total of 12 algorithms in CytoHubba. The antioxidant effects of <i>C. cretica</i> were investigated using 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity, which showed an increase in the trend activity of the plant extract with an inhibition percentage of 51.53 ± 0.003%. This was further validated by ferric reducing antioxidant power (FRAP) assay that resulted in an antioxidant activity of 6.64 µg/mL at a high concentration of 500 µg/mL. Molecular docking and simulation were performed to study the interaction of human cyclooxygenase-2 (PDB ID: 5KIR) with Cressa metabolites. 5KIR exhibited a higher interaction with methyl stearate, forming two H-bond interactions with Arg 120 and Tyr 355. Molecular dynamics simulation analysis confirmed the stability of the protein-ligand complex. The network pharmacology analysis of putative proteins obtained from <i>C. cretica</i> revealed that the peroxisome proliferator-activated receptor gamma (PPARG) gene is found in numerous cancer pathways and can be inhibited.

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Publication Details

Journal
Journal of Biomolecular Structure and Dynamics
Published
2025-03-04
DOI
https://doi.org/10.1080/07391102.2025.2472403
Citations
3
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
4.51

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article

Network pharmacological evaluation of Cressa cretica L.- an integrated approach of modern and ancient pharmacology

Vinod Kumar Nathan, Krishna Kant Gupta, Aparna Ganapathy Vilasam Sreekala, Pratham Gour Chintaluri et al.
3 citations
Journal of Biomolecular Structure and Dynamics
Computational Drug Discovery Methods
4.51
article

Network pharmacological evaluation of Cressa cretica L.- an integrated approach of modern and ancient pharmacology

Vinod Kumar Nathan, Krishna Kant Gupta, Aparna Ganapathy Vilasam Sreekala, Pratham Gour Chintaluri, Aparna Sivadasan
article en
3 citations

Abstract

<i>Cressa cretica</i> L. is immensely valuable in pharmacology. Computational approach through network pharmacology has been attempted to understand lead molecules of Cressa and their interactions with multiple targets. The phytochemical components of methanolic extracts of Cressa leaves were identified using GC-MS analysis, revealing 16 compounds. Using the identified lead molecules, target proteins were predicted using SWISS-target prediction and were analyzed using Cytoscape. This led to the identification of 56 candidate protein targets, which were used to construct a network using CytoHubba, Centiscape, MCODE, and KEGG pathways. The STRING network was created using Cytoscape for analyzing protein-protein interactions, and the top 5 genes were chosen from a total of 12 algorithms in CytoHubba. The antioxidant effects of <i>C. cretica</i> were investigated using 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity, which showed an increase in the trend activity of the plant extract with an inhibition percentage of 51.53 ± 0.003%. This was further validated by ferric reducing antioxidant power (FRAP) assay that resulted in an antioxidant activity of 6.64 µg/mL at a high concentration of 500 µg/mL. Molecular docking and simulation were performed to study the interaction of human cyclooxygenase-2 (PDB ID: 5KIR) with Cressa metabolites. 5KIR exhibited a higher interaction with methyl stearate, forming two H-bond interactions with Arg 120 and Tyr 355. Molecular dynamics simulation analysis confirmed the stability of the protein-ligand complex. The network pharmacology analysis of putative proteins obtained from <i>C. cretica</i> revealed that the peroxisome proliferator-activated receptor gamma (PPARG) gene is found in numerous cancer pathways and can be inhibited.

Journal of Biomolecular Structure and Dynamics
Ayurvedic Institute (US), National Centre for Cell Science (IN), Savitribai Phule Pune University (IN), SASTRA University (IN)
Department of Biotechnology, Government of West Bengal
Zero hunger
Openalex Percentile: Top 6%
Computational Drug Discovery Methods
4.51
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