Solvent-mediated dynamics of diphtheria toxin and NAD interaction

The interaction between diphtheria toxin (DT) and nicotinamide adenine dinucleotide (NAD) is central to DT's enzymatic activity, which involves ADP-ribosylation of eukaryotic elongation factors. This study aims to elucidate how solvent environments influence the thermodynamic and structural properties of the DT-NAD interaction. Using Raman Spectroscopy, and complementary techniques, we analyzed two different DTs, and by using Differential Scanning Calorimetry (DSC) we try to understand DT-NAD binding under varying solvent conditions, including distilled water, phosphate-buffered saline (PBS), and different concentrations of dimethyl sulfoxide (DMSO). Our findings reveal that solvent composition significantly alters the thermal stability and binding dynamics of DT. Notably, DSC data showed distinct shifts in melting temperatures (T<sub>m</sub>) and enthalpy changes (ΔH) across solvents, with 100% DMSO disrupting the interaction and causing structural denaturation. This study underscores the critical role of solvent selection in modulating protein-ligand interactions and offers valuable insights into the molecular dynamics of DT. These findings have broad implications for biochemical research and therapeutic applications involving protein stability in diverse environments.

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Publication Details

Journal
Journal of Biomolecular Structure and Dynamics
Published
2025-03-04
DOI
https://doi.org/10.1080/07391102.2025.2474684
Primary Topic
Toxin Mechanisms and Immunotoxins
Type
article
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article

Solvent-mediated dynamics of diphtheria toxin and NAD interaction

Tahsin Ertaş, Recep Üstünsoy, Bi̇rcan Di̇nç, Muhammet Bektaş
Journal of Biomolecular Structure and Dynamics
Toxin Mechanisms and Immunotoxins
article

Solvent-mediated dynamics of diphtheria toxin and NAD interaction

Tahsin Ertaş, Recep Üstünsoy, Bi̇rcan Di̇nç, Muhammet Bektaş
article en

Abstract

The interaction between diphtheria toxin (DT) and nicotinamide adenine dinucleotide (NAD) is central to DT's enzymatic activity, which involves ADP-ribosylation of eukaryotic elongation factors. This study aims to elucidate how solvent environments influence the thermodynamic and structural properties of the DT-NAD interaction. Using Raman Spectroscopy, and complementary techniques, we analyzed two different DTs, and by using Differential Scanning Calorimetry (DSC) we try to understand DT-NAD binding under varying solvent conditions, including distilled water, phosphate-buffered saline (PBS), and different concentrations of dimethyl sulfoxide (DMSO). Our findings reveal that solvent composition significantly alters the thermal stability and binding dynamics of DT. Notably, DSC data showed distinct shifts in melting temperatures (T<sub>m</sub>) and enthalpy changes (ΔH) across solvents, with 100% DMSO disrupting the interaction and causing structural denaturation. This study underscores the critical role of solvent selection in modulating protein-ligand interactions and offers valuable insights into the molecular dynamics of DT. These findings have broad implications for biochemical research and therapeutic applications involving protein stability in diverse environments.

Journal of Biomolecular Structure and Dynamics
Bahçeşehir University (TR), Adıyaman University (TR), Atlas Üniversitesi, Istanbul Arel University (TR), Istanbul University (TR)
Openalex Percentile: Top 95%
Toxin Mechanisms and Immunotoxins
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Solvent-mediated dynamics of diphtheria toxin and NAD interaction — Tahsin Ertaş, Recep Üstünsoy, et al. · Journal of Biomolecular Structure and Dynamics (2025) | TGRS Research Map | TGRS