Exploration of Using an Open‐Source Large Language Model for Analyzing Trial Information: A Case Study of Clinical Trials With Decentralized Elements

Despite interest in clinical trials with decentralized elements (DCTs), analysis of their trends in trial registries is lacking due to heterogeneous designs and unstandardized terms. We explored Llama 3, an open-source large language model, to efficiently evaluate these trends. Trial data were sourced from Aggregate Analysis of ClinicalTrials.gov, focusing on drug trials conducted between 2018 and 2023. We utilized three Llama 3 models with a different number of parameters: 8b (model 1), fine-tuned 8b (model 2) with curated data, and 70b (model 3). Prompt engineering enabled sophisticated tasks such as classification of DCTs with explanations and extracting decentralized elements. Model performance, evaluated on a 3-month exploratory test dataset, demonstrated that sensitivity could be improved after fine-tuning from 0.0357 to 0.5385. Low positive predictive value in the fine-tuned model 2 could be improved by focusing on trials with DCT-associated expressions from 0.5385 to 0.9167. However, the extraction of decentralized elements was only properly performed by model 3, which had a larger number of parameters. Based on the results, we screened the entire 6-year dataset after applying DCT-associated expressions. After the subsequent application of models 2 and 3, we identified 692 DCTs. We found that a total of 213 trials were classified as phase 2, followed by 162 phase 4 trials, 112 phase 3 trials, and 92 phase 1 trials. In conclusion, our study demonstrated the potential of large language models for analyzing clinical trial information not structured in a machine-readable format. Managing potential biases during model application is crucial.

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Publication Details

Journal
Clinical and Translational Science
Published
2025-03-01
DOI
https://doi.org/10.1111/cts.70183
Citations
2
Primary Topic
Artificial Intelligence in Healthcare and Education
Type
article
Field-Weighted Citation Impact
1.31
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article

Exploration of Using an Open‐Source Large Language Model for Analyzing Trial Information: A Case Study of Clinical Trials With Decentralized Elements

Hyunwook Ryu, Ki Young Huh, Jae Moon Koh, Yoonjin Kim et al.
2 citations
Clinical and Translational Science
Artificial Intelligence in Healthcare and Education
1.31
article

Exploration of Using an Open‐Source Large Language Model for Analyzing Trial Information: A Case Study of Clinical Trials With Decentralized Elements

Hyunwook Ryu, Ki Young Huh, Jae Moon Koh, Yoonjin Kim, Jiyeon Park, Ildae Song, Kyung‐Sang Yu, SeungHwan Lee, Kyung Hwan Kim
article en
2 citations

Abstract

Despite interest in clinical trials with decentralized elements (DCTs), analysis of their trends in trial registries is lacking due to heterogeneous designs and unstandardized terms. We explored Llama 3, an open-source large language model, to efficiently evaluate these trends. Trial data were sourced from Aggregate Analysis of ClinicalTrials.gov, focusing on drug trials conducted between 2018 and 2023. We utilized three Llama 3 models with a different number of parameters: 8b (model 1), fine-tuned 8b (model 2) with curated data, and 70b (model 3). Prompt engineering enabled sophisticated tasks such as classification of DCTs with explanations and extracting decentralized elements. Model performance, evaluated on a 3-month exploratory test dataset, demonstrated that sensitivity could be improved after fine-tuning from 0.0357 to 0.5385. Low positive predictive value in the fine-tuned model 2 could be improved by focusing on trials with DCT-associated expressions from 0.5385 to 0.9167. However, the extraction of decentralized elements was only properly performed by model 3, which had a larger number of parameters. Based on the results, we screened the entire 6-year dataset after applying DCT-associated expressions. After the subsequent application of models 2 and 3, we identified 692 DCTs. We found that a total of 213 trials were classified as phase 2, followed by 162 phase 4 trials, 112 phase 3 trials, and 92 phase 1 trials. In conclusion, our study demonstrated the potential of large language models for analyzing clinical trial information not structured in a machine-readable format. Managing potential biases during model application is crucial.

Clinical and Translational ScienceVol. 18(3)
Kyungsung University (KR), Seoul National University (KR), Seoul National University Hospital (KR)
Openalex Percentile: Top 17%
Artificial Intelligence in Healthcare and Education
1.31
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