Design and Synthesis of Novel Deazapurine DNMT 1 Inhibitors with <i>In Vivo</i> Efficacy in DLBCL

The application of drugs to regulate abnormal epigenetic changes has become an important means of tumor treatment. In this study, we employed computer-aided design methods to develop a novel deazapurine compound targeting DNA methyltransferase 1 (DNMT1). Through screening for enzyme activity, selectivity, and cellular efficacy, we optimized three structural skeletons, ultimately yielding compound <b>55,</b> exhibiting an IC<sub>50</sub> of 2.42 μM for DNMT1. Compound <b>55</b> displayed excellent <i>in vitro</i> inhibitory effects on various hematological tumor and solid tumor cell lines, especially lymphoma cells, with IC<sub>50</sub> values in the nanomolar range. <i>In vitro</i> studies confirmed compound <b>55</b> selectively inhibited DNMT1 and exhibited demethylation ability. <i>In vivo</i> mouse model validated the DNA methylation inhibition of compound <b>55</b>. Compound <b>55</b> demonstrated good antitumor activity <i>in vivo</i>. Specifically, compound <b>55</b> combined with chidamide demonstrated a superior therapeutic effect over the first-line therapy RTX-CHOP in both the DEL and TP53 mutant DLBCL PDX tumor models.

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Publication Details

Journal
Journal of Medicinal Chemistry
Published
2025-03-01
DOI
https://doi.org/10.1021/acs.jmedchem.4c02391
Citations
1
Primary Topic
Chronic Lymphocytic Leukemia Research
Type
article
Field-Weighted Citation Impact
1.63

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article

Design and Synthesis of Novel Deazapurine DNMT 1 Inhibitors with In Vivo Efficacy in DLBCL

Minghai Tang, Wanhua Zhang, Yi Wen, Yunhua Zheng et al.
1 citations
Journal of Medicinal Chemistry
Chronic Lymphocytic Leukemia Research
1.63
article

Design and Synthesis of Novel Deazapurine DNMT 1 Inhibitors with In Vivo Efficacy in DLBCL

Minghai Tang, Wanhua Zhang, Yi Wen, Yunhua Zheng, Lijuan Chen, Yaxin Teng, Tao Yang, Zhuang Yang, Linyu Yang
article en
1 citations

Abstract

The application of drugs to regulate abnormal epigenetic changes has become an important means of tumor treatment. In this study, we employed computer-aided design methods to develop a novel deazapurine compound targeting DNA methyltransferase 1 (DNMT1). Through screening for enzyme activity, selectivity, and cellular efficacy, we optimized three structural skeletons, ultimately yielding compound <b>55,</b> exhibiting an IC<sub>50</sub> of 2.42 μM for DNMT1. Compound <b>55</b> displayed excellent <i>in vitro</i> inhibitory effects on various hematological tumor and solid tumor cell lines, especially lymphoma cells, with IC<sub>50</sub> values in the nanomolar range. <i>In vitro</i> studies confirmed compound <b>55</b> selectively inhibited DNMT1 and exhibited demethylation ability. <i>In vivo</i> mouse model validated the DNA methylation inhibition of compound <b>55</b>. Compound <b>55</b> demonstrated good antitumor activity <i>in vivo</i>. Specifically, compound <b>55</b> combined with chidamide demonstrated a superior therapeutic effect over the first-line therapy RTX-CHOP in both the DEL and TP53 mutant DLBCL PDX tumor models.

Journal of Medicinal ChemistryVol. 68(5)
Sichuan University (CN), Third People's Hospital of Chengdu (CN), State Key Laboratory of Biotherapy, Southwest Jiaotong University (CN)
National Natural Science Foundation of China, West China Hospital, Sichuan University
Openalex Percentile: Top 20%
Chronic Lymphocytic Leukemia Research
1.63
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