Design and Synthesis of Novel Deazapurine DNMT 1 Inhibitors with <i>In Vivo</i> Efficacy in DLBCL
The application of drugs to regulate abnormal epigenetic changes has become an important means of tumor treatment. In this study, we employed computer-aided design methods to develop a novel deazapurine compound targeting DNA methyltransferase 1 (DNMT1). Through screening for enzyme activity, selectivity, and cellular efficacy, we optimized three structural skeletons, ultimately yielding compound <b>55,</b> exhibiting an IC<sub>50</sub> of 2.42 μM for DNMT1. Compound <b>55</b> displayed excellent <i>in vitro</i> inhibitory effects on various hematological tumor and solid tumor cell lines, especially lymphoma cells, with IC<sub>50</sub> values in the nanomolar range. <i>In vitro</i> studies confirmed compound <b>55</b> selectively inhibited DNMT1 and exhibited demethylation ability. <i>In vivo</i> mouse model validated the DNA methylation inhibition of compound <b>55</b>. Compound <b>55</b> demonstrated good antitumor activity <i>in vivo</i>. Specifically, compound <b>55</b> combined with chidamide demonstrated a superior therapeutic effect over the first-line therapy RTX-CHOP in both the DEL and TP53 mutant DLBCL PDX tumor models.
Authors
- Minghai Tang (ORCID: https://orcid.org/0000-0002-5527-4223)
- Wanhua Zhang (ORCID: https://orcid.org/0000-0001-7229-347X)
- Yi Wen (ORCID: https://orcid.org/0009-0009-9572-1049)
- Yunhua Zheng
- Lijuan Chen (ORCID: https://orcid.org/0000-0002-8076-163X)
- Yaxin Teng
- Tao Yang (ORCID: https://orcid.org/0000-0003-0186-9907)
- Zhuang Yang (ORCID: https://orcid.org/0000-0002-8915-9944)
- Linyu Yang
Institutions
- Sichuan University (CN)
- Third People's Hospital of Chengdu (CN)
- State Key Laboratory of Biotherapy
- Southwest Jiaotong University (CN)
Publication Details
- Journal
- Journal of Medicinal Chemistry
- Published
- 2025-03-01
- DOI
- https://doi.org/10.1021/acs.jmedchem.4c02391
- Citations
- 1
- Primary Topic
- Chronic Lymphocytic Leukemia Research
- Type
- article
- Field-Weighted Citation Impact
- 1.63
Funders
- National Natural Science Foundation of China
- West China Hospital, Sichuan University