A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees

Maximum agreement forests have been used as a measure of dissimilarity of two or more phylogenetic trees on a given set of taxa. An agreement forest is a set of trees that can be obtained from each of the input trees by deleting edges and suppressing degree-2 vertices. A maximum agreement forest is such a forest with the minimum number of components. We present a simple 4-approximation algorithm for computing a maximum agreement forest of multiple unrooted binary trees. This algorithm applies LP rounding to an extension of a recent ILP formulation of the maximum agreement forest problem on two trees by Van Wersch et al. [13] . We achieve the same approximation ratio as the algorithm by Chen et al. [3] , but our algorithm is extremely simple. We also prove that no algorithm based on the ILP formulation by Van Wersch et al. can achieve an approximation ratio of 4 − ε , for any ε > 0 , even on two trees. To this end, we prove that the integrality gap of the ILP approaches 4 as the size of the two input trees grows. • A simple 4-approximation algorithm for computing maximum agreement forests for multiple unrooted phylogenetic trees. • Use of LP rounding and a relatively new ILP formulation to achieve results. • Proof that 4-approximation is the best obtainable via this ILP formulation, even for two trees.

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Publication Details

Journal
Information Processing Letters
Published
2025-03-01
DOI
https://doi.org/10.1016/j.ipl.2025.106572
Citations
1
Primary Topic
Complexity and Algorithms in Graphs
Type
article
Field-Weighted Citation Impact
1.50

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article

A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees

Norbert Zeh, Leo J. J. van Iersel, Mark M. Jones, Jordan Dempsey
1 citations
Information Processing Letters
Complexity and Algorithms in Graphs
1.50
article

A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees

Norbert Zeh, Leo J. J. van Iersel, Mark M. Jones, Jordan Dempsey
article en
1 citations

Abstract

Maximum agreement forests have been used as a measure of dissimilarity of two or more phylogenetic trees on a given set of taxa. An agreement forest is a set of trees that can be obtained from each of the input trees by deleting edges and suppressing degree-2 vertices. A maximum agreement forest is such a forest with the minimum number of components. We present a simple 4-approximation algorithm for computing a maximum agreement forest of multiple unrooted binary trees. This algorithm applies LP rounding to an extension of a recent ILP formulation of the maximum agreement forest problem on two trees by Van Wersch et al. [13] . We achieve the same approximation ratio as the algorithm by Chen et al. [3] , but our algorithm is extremely simple. We also prove that no algorithm based on the ILP formulation by Van Wersch et al. can achieve an approximation ratio of 4 − ε , for any ε > 0 , even on two trees. To this end, we prove that the integrality gap of the ILP approaches 4 as the size of the two input trees grows. • A simple 4-approximation algorithm for computing maximum agreement forests for multiple unrooted phylogenetic trees. • Use of LP rounding and a relatively new ILP formulation to achieve results. • Proof that 4-approximation is the best obtainable via this ILP formulation, even for two trees.

Information Processing LettersVol. 190
Dalhousie University (CA), Delft University of Technology (NL)
Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 19%
Complexity and Algorithms in Graphs
1.50
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