Infrared spectrum analysis of organic molecules with neural networks using standard reference data sets in combination with real-world data

In this study, we propose a neural network- based approach to analyze IR spectra and detect the presence of functional groups. Our neural network architecture is based on the concept of learning split representations. We demonstrate that our method achieves favorable validation performance using the NIST dataset. Furthermore, by incorporating additional data from the open-access research data repository Chemotion, we show that our model improves the classification performance for nitriles and amides. Scientific contribution: Our method exclusively uses IR data as input for a neural network, making its performance, unlike other well-performing models, independent of additional data types obtained from analytical measurements. Furthermore, our proposed method leverages a deep learning model that outperforms previous approaches, achieving F1 scores above 0.7 to identify 17 functional groups. By incorporating real-world data from various laboratories, we demonstrate how open-access, specialized research data repositories can serve as yet unexplored, valuable benchmark datasets for future machine learning research.

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Publication Details

Journal
Journal of Cheminformatics
Published
2025-02-26
DOI
https://doi.org/10.1186/s13321-025-00960-2
Citations
6
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
9.03
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article

Infrared spectrum analysis of organic molecules with neural networks using standard reference data sets in combination with real-world data

Pascal Friederich, Pierre Tremouilhac, Yu‐Chieh Huang, Laura Holzhauer et al.
6 citations
Journal of Cheminformatics
Computational Drug Discovery Methods
9.03
article

Infrared spectrum analysis of organic molecules with neural networks using standard reference data sets in combination with real-world data

Pascal Friederich, Pierre Tremouilhac, Yu‐Chieh Huang, Laura Holzhauer, Nicole Jung, Dev Punjabi, Stefan Bräse
article en
6 citations

Abstract

In this study, we propose a neural network- based approach to analyze IR spectra and detect the presence of functional groups. Our neural network architecture is based on the concept of learning split representations. We demonstrate that our method achieves favorable validation performance using the NIST dataset. Furthermore, by incorporating additional data from the open-access research data repository Chemotion, we show that our model improves the classification performance for nitriles and amides. Scientific contribution: Our method exclusively uses IR data as input for a neural network, making its performance, unlike other well-performing models, independent of additional data types obtained from analytical measurements. Furthermore, our proposed method leverages a deep learning model that outperforms previous approaches, achieving F1 scores above 0.7 to identify 17 functional groups. By incorporating real-world data from various laboratories, we demonstrate how open-access, specialized research data repositories can serve as yet unexplored, valuable benchmark datasets for future machine learning research.

Journal of CheminformaticsVol. 17(1)
Karlsruhe Institute of Technology (DE), Institute of Nanotechnology (GB)
Partnerships for the goals
Openalex Percentile: Top 2%
Computational Drug Discovery Methods
9.03
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Infrared spectrum analysis of organic molecules with neural networks using standard reference data sets in combination with real-world data — Pascal Friederich, Pierre Tremouilhac, et al. · Journal of Cheminformatics (2025) | TGRS Research Map | TGRS