Mining coral-derived terpene synthases and mechanistic studies of the coral biflorane synthase

Biflorane diterpenoids are unique natural products often seen in marine animals. Recent studies have reported a small number of biflorane synthases. However, the catalytic mechanism and structural basis for biflorane formation remain unclear. To address these issues, we conducted genome mining of terpene synthases from the sea whip coral <i>Paramuricea clavata</i>, resulting in the discovery of a biflorane synthase <i>Pc</i>TS1. We performed a series of isotope labeling, crystallography, quantum mechanics/molecular mechanics calculations, and mutagenesis studies toward <i>Pc</i>TS1 to investigate the mechanism. Isotopic labeling studies, together with calculations, elucidate a cascade of 1,10-cyclization, 1,3-hydride shift, 1,6-cyclization, 1,2-hydride shift, 2,6-cyclization, cyclopropane ring opening, and deprotonation by the generated pyrophosphate, forming the biflorane scaffold. Crystallography, quantum mechanics/molecular mechanics, and mutagenesis studies confirmed the cascade and produced different terpene scaffolds. Our work demonstrated the mechanism of marine biflorane formation, elucidated the second crystal structure of a coral terpene synthase, and realized the terpene skeleton expansion.

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Publication Details

Journal
Science Advances
Published
2025-02-26
DOI
https://doi.org/10.1126/sciadv.adv0805
Citations
10
Primary Topic
Plant biochemistry and biosynthesis
Type
article
Field-Weighted Citation Impact
8.06
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article

Mining coral-derived terpene synthases and mechanistic studies of the coral biflorane synthase

Kangwei Xu, Baofu Xu, Bao Chen, Ruibo Wu et al.
10 citations
Science Advances
Plant biochemistry and biosynthesis
8.06
article

Mining coral-derived terpene synthases and mechanistic studies of the coral biflorane synthase

Kangwei Xu, Baofu Xu, Bao Chen, Ruibo Wu, Yue‐Wei Guo, Wei Lin, Chengyuan Wang, Jingjing Mao, Lijun Liu
article en
10 citations

Abstract

Biflorane diterpenoids are unique natural products often seen in marine animals. Recent studies have reported a small number of biflorane synthases. However, the catalytic mechanism and structural basis for biflorane formation remain unclear. To address these issues, we conducted genome mining of terpene synthases from the sea whip coral <i>Paramuricea clavata</i>, resulting in the discovery of a biflorane synthase <i>Pc</i>TS1. We performed a series of isotope labeling, crystallography, quantum mechanics/molecular mechanics calculations, and mutagenesis studies toward <i>Pc</i>TS1 to investigate the mechanism. Isotopic labeling studies, together with calculations, elucidate a cascade of 1,10-cyclization, 1,3-hydride shift, 1,6-cyclization, 1,2-hydride shift, 2,6-cyclization, cyclopropane ring opening, and deprotonation by the generated pyrophosphate, forming the biflorane scaffold. Crystallography, quantum mechanics/molecular mechanics, and mutagenesis studies confirmed the cascade and produced different terpene scaffolds. Our work demonstrated the mechanism of marine biflorane formation, elucidated the second crystal structure of a coral terpene synthase, and realized the terpene skeleton expansion.

Science AdvancesVol. 11(9)
Shanghai University (CN), Sun Yat-sen University (CN), Chinese Academy of Sciences (CN), Nanjing Drum Tower Hospital (CN), Shanghai Institute of Materia Medica (CN)
Life below water
Openalex Percentile: Top 2%
Plant biochemistry and biosynthesis
8.06
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